Exact match search in sequence data using suffix trees. - Mihail Halachev; Nematollaah Shiri; Anand Thamildurai (CIKM, 2005)

Efficient and Scalable Indexing Techniques for Biological Sequence Data. - Mihail Halachev; Nematollaah Shiri; Anand Thamildurai (BIRD, 2007)

Fast Structured Motif Search in DNA Sequences. - Mihail Halachev; Nematollaah Shiri (BIRD, 2008)

Searching for Supermaximal Repeats in Large DNA Sequences. - Chen Na Lian; Mihail Halachev; Nematollaah Shiri (BIRD, 2008)