pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins. - Mihaly Varadi; Simone Kosol; Pierre Lebrun; Erica Valentini; Martin Blackledge; A. Keith Dunker; Isabella C. Felli; Julie D. Forman-Kay; Richard W. Kriwacki; Roberta Pierattelli; Joel L. Sussman; Dmitri I. Svergun; et al. (Nucleic Acids Res., 2014)

DisCons: a novel tool to quantify and classify evolutionary conservation of intrinsic protein disorder. - Mihaly Varadi; Mainak Guharoy; Fruzsina Zsolyomi; Peter Tompa (BMC Bioinform., 2015)

Start2Fold: a database of hydrogen/deuterium exchange data on protein folding and stability. - Rita Pancsa; Mihaly Varadi; Peter Tompa; Wim F. Vranken (Nucleic Acids Res., 2016)

PDBe: towards reusable data delivery infrastructure at protein data bank in Europe. - Saqib Mir; Younes Alhroub; Stephen Anyango; David R. Armstrong; John M. Berrisford; Alice R. Clark; Matthew J. Conroy; Jose M. Dana; Mandar S. Deshpande; Deepti Gupta; Aleksandras Gutmanas; Pauline Haslam; et al. (Nucleic Acids Res., 2018)

AmyPro: a database of proteins with validated amyloidogenic regions. - Mihaly Varadi; Greet De Baets; Wim F. Vranken; Peter Tompa; Rita Pancsa (Nucleic Acids Res., 2018)

PDBe: improved findability of macromolecular structure data in the PDB. - David R. Armstrong; John M. Berrisford; Matthew J. Conroy; Aleksandras Gutmanas; Stephen Anyango; Preeti Choudhary; Alice R. Clark; Jose M. Dana; Mandar S. Deshpande; Roisin Dunlop; Paul J. Gane; Romana Gáborová; et al. (Nucleic Acids Res., 2020)

PDBe-KB: a community-driven resource for structural and functional annotations. - Mihaly Varadi; John M. Berrisford; Mandar S. Deshpande; Sreenath Nair; Aleksandras Gutmanas; David R. Armstrong; Lukás Pravda; Bissan Al-Lazikani; Stephen Anyango; Geoffrey J. Barton; Karel Berka; Tom L. Blundell; et al. (Nucleic Acids Res., 2020)

The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies. - Vaishali P. Waman; Neeladri Sen; Mihaly Varadi; Antoine Daina; Shoshana J. Wodak; Vincent Zoete; Sameer Velankar; Christine A. Orengo (Briefings Bioinform., 2021)

PDBe aggregated API: programmatic access to an integrative knowledge graph of molecular structure data. - Sreenath Nair; Mihaly Varadi; Nurul Nadzirin; Lukás Pravda; Stephen Anyango; Saqib Mir; John M. Berrisford; David R. Armstrong; Aleksandras Gutmanas; Sameer Velankar (Bioinform., 2021)

PDBeCIF: an open-source mmCIF/CIF parsing and processing package. - Glen van Ginkel; Lukás Pravda; Jose M. Dana; Mihaly Varadi; Peter A. Keller; Stephen Anyango; Sameer Velankar (BMC Bioinform., 2021)

PDBe-KB: collaboratively defining the biological context of structural data. - Mihaly Varadi; Stephen Anyango; David R. Armstrong; John M. Berrisford; Preeti Choudhary; Mandar S. Deshpande; Nurul Nadzirin; Sreenath Nair; Lukás Pravda; Ahsan Tanweer; Bissan Al-Lazikani; Claudia Andreini; et al. (Nucleic Acids Res., 2022)

AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models. - Mihaly Varadi; Stephen Anyango; Mandar S. Deshpande; Sreenath Nair; Cindy Natassia; Galabina Yordanova; David Yuan; Oana Stroe; Gemma Wood; Agata Laydon; Augustin Zídek; Tim Green; et al. (Nucleic Acids Res., 2022)

PDBImages: a command-line tool for automated macromolecular structure visualization. - Adam Midlik; Sreenath Nair; Stephen Anyango; Mandar S. Deshpande; David Sehnal; Mihaly Varadi; Sameer Velankar (Bioinform., 2023)

PDBe CCDUtils: an RDKit-based toolkit for handling and analysing small molecules in the Protein Data Bank. - Ibrahim Roshan Kunnakkattu; Preeti Choudhary; Lukás Pravda; Nurul Nadzirin; Oliver S. Smart; Qi Yuan; Stephen Anyango; Sreenath Nair; Mihaly Varadi; Sameer Velankar (J. Cheminformatics, 2023)

PDB NextGen Archive: centralizing access to integrated annotations and enriched structural information by the Worldwide Protein Data Bank. - Preeti Choudhary; Zukang Feng; John M. Berrisford; Henry Chao; Yasuyo Ikegawa; Ezra Peisach; Dennis W. Piehl; James Smith 002; Ahsan Tanweer; Mihaly Varadi; John D. Westbrook; Jasmine Young; et al. (Database J. Biol. Databases Curation, 2024)