New energy terms for reduced protein models implemented in an off-lattice force field. - Tommi Hassinen; Mikael Peräkylä (J. Comput. Chem., 2001)

Evaluation of a Novel Electronic Eigenvalue (EEVA) Molecular Descriptor for QSAR/QSPR Studies: Validation Using a Benchmark Steroid Data Set. - Kari Tuppurainen; Marja Viisas; Reino Laatikainen; Mikael Peräkylä (J. Chem. Inf. Comput. Sci., 2002)

FLUFF-BALL, A Template-Based Grid-Independent Superposition and QSAR Technique: Validation Using a Benchmark Steroid Data Set. - Samuli-Petrus Korhonen; Kari Tuppurainen; Reino Laatikainen; Mikael Peräkylä (J. Chem. Inf. Comput. Sci., 2003)

Ligand intramolecular motions in ligand-protein interaction: ALPHA, a novel dynamic descriptor and a QSAR study with extended steroid benchmark dataset. - Kari Tuppurainen; Marja Viisas; Mikael Peräkylä; Reino Laatikainen (J. Comput. Aided Mol. Des., 2004)

Comparing the Performance of FLUFF-BALL to SEAL-CoMFA with a Large Diverse Estrogen Data Set: From Relevant Superpositions to Solid Predictions. - Samuli-Petrus Korhonen; Kari Tuppurainen; Reino Laatikainen; Mikael Peräkylä (J. Chem. Inf. Model., 2005)

Molecular Dynamics Simulation Studies on the Modulation of Vitamin D Receptor Activity by Agonists and Antagonists. - Mikael Peräkylä (PARA, 2006)