Dynamic Burrows-Wheeler Transform. - Mikaël Salson; Thierry Lecroq; Martine Léonard; Laurent Mouchard (Stringology, 2008)

A four-stage algorithm for updating a Burrows-Wheeler transform. - Mikaël Salson; Thierry Lecroq; Martine Léonard; Laurent Mouchard (Theor. Comput. Sci., 2009)

Dynamic extended suffix arrays. - Mikaël Salson; Thierry Lecroq; Martine Léonard; Laurent Mouchard (J. Discrete Algorithms, 2010)

Querying large read collections in main memory: a versatile data structure. - Nicolas Philippe; Mikaël Salson; Thierry Lecroq; Martine Léonard; Therese Commes; Eric Rivals (BMC Bioinform., 2011)

A Scalable Indexing Solution to Mine Huge Genomic Sequence Collections. - Eric Rivals; Nicolas Philippe; Mikaël Salson; Martine Léonard; Therese Commes; Thierry Lecroq (ERCIM News, 2012)

On the number of elements to reorder when updating a suffix array. - Martine Léonard; Laurent Mouchard; Mikaël Salson (J. Discrete Algorithms, 2012)

Lossless Seeds for Searching Short Patterns with High Error Rates. - Christophe Vroland; Mikaël Salson; Hélène Touzet (IWOCA, 2014)

Approximate search of short patterns with high error rates using the 01⁎0 lossless seeds. - Christophe Vroland; Mikaël Salson; Sébastien Bini; Hélène Touzet (J. Discrete Algorithms, 2016)

Efficient dynamic range minimum query. - Alice Héliou; Martine Léonard; Laurent Mouchard; Mikaël Salson (Theor. Comput. Sci., 2016)

SimBA: A methodology and tools for evaluating the performance of RNA-Seq bioinformatic pipelines. - Jerome Audoux; Mikaël Salson; Christophe F. Grosset; Sacha Beaumeunier; Jean-Marc Holder; Therese Commes; Nicolas Philippe (BMC Bioinform., 2017)

Indexing labeled sequences. - Tatiana Rocher; Mathieu Giraud; Mikaël Salson (PeerJ Comput. Sci., 2018)

REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets. - Camille Marchet; Zamin Iqbal; Daniel Gautheret; Mikaël Salson; Rayan Chikhi (Bioinform., 2020)

Frugal alignment-free identification of FLT3-internal tandem duplications with FiLT3r. - Augustin Boudry; Sasha Darmon; Nicolas Duployez; Martin Figeac; Sandrine Geffroy; Maxime Bucci; Karine Celli-Lebras; Matthieu Duchmann; Romane Joudinaud; Laurène Fenwarth; Olivier Nibourel; Laure Goursaud; et al. (BMC Bioinform., 2022)

Publisher Correction: Frugal alignment-free identification of FLT3-internal tandem duplications with FiLT3r. - Augustin Boudry; Sasha Darmon; Nicolas Duployez; Martin Figeac; Sandrine Geffroy; Maxime Bucci; Karine Celli-Lebras; Matthieu Duchmann; Romane Joudinaud; Laurène Fenwarth; Olivier Nibourel; Laure Goursaud; et al. (BMC Bioinform., 2022)

Méthodes sans alignement et indexation pour l'analyse de données nucléiques massives. - Mikaël Salson (2023)

On the number of k-mers admitting a given lexicographical minimizer. - Florian Ingels; Camille Marchet; Mikaël Salson (CoRR, 2024)