NORMA: The Network Makeup Artist - A Web Tool for Network Annotation Visualization. - Mikaela Koutrouli; Evangelos Karatzas; Katerina Papanikolopoulou; Georgios A. Pavlopoulos (Genom. Proteom. Bioinform., 2022)

The STRING database in 2023: protein-protein association networks and functional enrichment analyses for any sequenced genome of interest. - Damian Szklarczyk; Rebecca Kirsch; Mikaela Koutrouli; Katerina C. Nastou; Farrokh Mehryary; Radja Hachilif; Annika L. Gable; Tao Fang; Nadezhda T. Doncheva; Sampo Pyysalo; Peer Bork; Lars Juhl Jensen; et al. (Nucleic Acids Res., 2023)

Improving dictionary-based named entity recognition with deep learning. - Katerina C. Nastou; Mikaela Koutrouli; Sampo Pyysalo; Lars Juhl Jensen (Bioinform., 2024)

FAVA: high-quality functional association networks inferred from scRNA-seq and proteomics data. - Mikaela Koutrouli; Katerina C. Nastou; Pau Piera Líndez; Robbin Bouwmeester; Simon Rasmussen; Lennart Martens; Lars Juhl Jensen (Bioinform., 2024)