beadarray: R classes and methods for Illumina bead-based data. - Mark J. Dunning; Mike L. Smith; Matthew E. Ritchie; Simon Tavaré (Bioinform., 2007)

Identification and correction of previously unreported spatial phenomena using raw Illumina BeadArray data. - Mike L. Smith; Mark J. Dunning; Simon Tavaré; Andy G. Lynch (BMC Bioinform., 2010)

BayesPeak - an R package for analysing ChIP-seq data. - Jonathan M. Cairns; Christiana Spyrou; Rory Stark; Mike L. Smith; Andy G. Lynch; Simon Tavaré (Bioinform., 2011)

BeadArray Expression Analysis Using Bioconductor. - Matthew E. Ritchie; Mark J. Dunning; Mike L. Smith; Wei Shi; Andy G. Lynch (PLoS Comput. Biol., 2011)

illuminaio: An open source IDAT parsing tool for Illumina microarrays. - Mike L. Smith; Keith A. Baggerly; Henrik Bengtsson; Matthew E. Ritchie; Kasper D. Hansen (F1000Research, 2013)

Authoring Bioconductor workflows with BiocWorkflowTools. - Mike L. Smith; Andrzej K. Oles; Wolfgang Huber (F1000Research, 2018)

beachmat: A Bioconductor C++ API for accessing high-throughput biological data from a variety of R matrix types. - Aaron T. L. Lun; Hervé Pagès; Mike L. Smith (PLoS Comput. Biol., 2018)