HPC++ and the HPC++Lib Toolkit. - Dennis Gannon; Peter H. Beckman; Elizabeth Johnson; Todd Green; Mike Levine (Compiler Optimizations for Scalable Parallel Systems Languages, 2001)

Decoding Noncoding Regulatory DNAs in Metazoan Genomes. - Michele Markstein; Angela Stathopoulos; Vicky Markstein; Peter W. Markstein; Naoe Harafuji; Dave Keys; Byung-in Lee; Paul Richardson; Dan Rokshar; Mike Levine (CSB, 2002)

A Regulatory Network Controlling Drosophila Development. - Dmitri A. Papatsenko; Mike Levine (RECOMB, 2005)

Temporal waves of coherent gene expression during Drosophila embryogenesis. - Ilya Papatsenko; Mike Levine; Dmitri A. Papatsenko (Bioinform., 2010)