Clustering Metagenome Short Reads Using Weighted Proteins. - Gianluigi Folino; Fabio Gori; Mike S. M. Jetten; Elena Marchiori (EvoBIO, 2009)

Evidence-Based Clustering of Reads and Taxonomic Analysis of Metagenomic Data. - Gianluigi Folino; Fabio Gori; Mike S. M. Jetten; Elena Marchiori (PRIB, 2009)

FACIL: Fast and Accurate Genetic Code Inference and Logo. - Bas E. Dutilh; Rasa Jurgelenaite; Radek Szklarczyk; Sacha A. F. T. van Hijum; Harry R. Harhangi; Markus Schmid 002; Bart de Wild; Kees-Jan Françoijs; Henk Stunnenberg; Marc Strous; Mike S. M. Jetten; Huub J. M. Op den Camp; et al. (Bioinform., 2011)

MTR: taxonomic annotation of short metagenomic reads using clustering at multiple taxonomic ranks. - Fabio Gori; Gianluigi Folino; Mike S. M. Jetten; Elena Marchiori (Bioinform., 2011)

Metascan: METabolic Analysis, SCreening and ANnotation of Metagenomes. - Geert Cremers; Mike S. M. Jetten; Huub J. M. Op den Camp; Sebastian Lücker (Frontiers Bioinform., 2022)