Distinguishing Biological from Technical Sources of Variation Using a Combination of Methylation Datasets. - Mike Thompson; Zeyuan Johnson Chen; Elior Rahmani; Eran Halperin (RECOMB, 2019)

Modeling the temporal dynamics of the gut microbial community in adults and infants. - Liat Shenhav; Ori Furman; Leah Briscoe; Mike Thompson; Justin D. Silverman; Itzhak Mizrahi; Eran Halperin (PLoS Comput. Biol., 2019)

Xilinx Versal™ Premium. - Martin Voogel; Yohan Frans; Matt Ouellette; Jason Coppens; Sagheer Ahmad; Jaideep Dastidar; Ehab Mohsen; Faisal Dada; Mike Thompson; Ralph Wittig; Trevor Bauer; Gaurav Singh (Hot Chips Symposium, 2020)

Leveraging replicable sources of variability to increase power and interpretability in analyses of genomic datasets. - Mike Thompson (2022)

AI for Sustainable Land Management and Greenhouse Gas Emission Forecasting: Advancing Climate Action. - Jack Cutler; Baihua Li; Bashar Alhnaity; Tom Partridge; Mike Thompson; Qinggang Meng (CACML, 2025)