Biological Data Management: Research, Practice and Opportunities. - Thodoros Topaloglou; Susan B. Davidson; H. V. Jagadish; Victor M. Markowitz; Evan W. Steeg; Mike Tyers (VLDB, 2004)

BioGRID: a general repository for interaction datasets. - Chris Stark; Bobby-Joe Breitkreutz; Teresa Reguly; Lorrie Boucher; Ashton Breitkreutz; Mike Tyers (Nucleic Acids Res., 2006)

Evolutionary and Physiological Importance of Hub Proteins. - Nizar N. Batada; Laurence D. Hurst; Mike Tyers (PLoS Comput. Biol., 2006)

Structure-Templated Predictions of Novel Protein Interactions from Sequence Information. - Doron Betel; Kevin E. Breitkreuz; Ruth Isserlin; Danielle Dewar-Darch; Mike Tyers; Christopher W. V. Hogue (PLoS Comput. Biol., 2007)

The BioGRID Interaction Database: 2008 update. - Bobby-Joe Breitkreutz; Chris Stark; Teresa Reguly; Lorrie Boucher; Ashton Breitkreutz; Michael S. Livstone; Rose Oughtred; Daniel H. Lackner; Jürg Bähler; Valerie Wood; Kara Dolinski; Mike Tyers (Nucleic Acids Res., 2008)

PhosphoGRID: a database of experimentally verified in vivo protein phosphorylation sites from the budding yeast Saccharomyces cerevisiae. - Chris Stark; Ting-Cheng Su; Ashton Breitkreutz; Pedro Lourenco; Matthew Dahabieh; Bobby-Joe Breitkreutz; Mike Tyers; Ivan Sadowski (Database J. Biol. Databases Curation, 2010)

An Ontology-Based Approach to Linking Model Organisms and Resources to Human Diseases. - Chris Mungall; David Anderson; Anita E. Bandrowski; Brian A. Canada; Andrew Chatr-aryamontri; Keith C. Cheng; P. Michael Conn; Kara Dolinski; Mark H. Ellisman; Janan T. Eppig; Jeffrey S. Grethe; Joseph W. Kemnitz; et al. (ICBO, 2011)

BioGRID REST Service, BiogridPlugin2 and BioGRID WebGraph: new tools for access to interaction data at BioGRID. - Andrew G. Winter; Jan Wildenhain; Mike Tyers (Bioinform., 2011)

Benchmarking of the 2010 BioCreative Challenge III text-mining competition by the BioGRID and MINT interaction databases. - Andrew Chatr-aryamontri; Andrew G. Winter; Livia Perfetto; Leonardo Briganti; Luana Licata; Marta Iannuccelli; Luisa Castagnoli; Gianni Cesareni; Mike Tyers (BMC Bioinform., 2011)

The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text. - Martin Krallinger; Miguel Vazquez; Florian Leitner; David Salgado; Andrew Chatr-aryamontri; Andrew G. Winter; Livia Perfetto; Leonardo Briganti; Luana Licata; Marta Iannuccelli; Luisa Castagnoli; Gianni Cesareni; et al. (BMC Bioinform., 2011)

The BioGRID Interaction Database: 2011 update. - Chris Stark; Bobby-Joe Breitkreutz; Andrew Chatr-aryamontri; Lorrie Boucher; Rose Oughtred; Michael S. Livstone; Julie Nixon; Kimberly Van Auken; Xiaodong Wang 008; Xiaoqi Shi; Teresa Reguly; Jennifer M. Rust; et al. (Nucleic Acids Res., 2011)

How to link ontologies and protein-protein interactions to literature: text-mining approaches and the BioCreative experience. - Martin Krallinger; Florian Leitner; Miguel Vazquez; David Salgado; Christophe Marcelle; Mike Tyers; Alfonso Valencia; Andrew Chatr-aryamontri (Database J. Biol. Databases Curation, 2012)

MolClass: a web portal to interrogate diverse small molecule screen datasets with different computational models. - Jan Wildenhain; Nicholas FitzGerald; Mike Tyers (Bioinform., 2012)

The PhosphoGRID Saccharomyces cerevisiae protein phosphorylation site database: version 2.0 update. - Ivan Sadowski; Bobby-Joe Breitkreutz; Chris Stark; Ting-Cheng Su; Matthew Dahabieh; Sheetal Raithatha; Wendy Bernhard; Rose Oughtred; Kara Dolinski; Kris Barreto; Mike Tyers (Database J. Biol. Databases Curation, 2013)

The BioGRID interaction database: 2013 update. - Andrew Chatr-aryamontri; Bobby-Joe Breitkreutz; Sven Heinicke; Lorrie Boucher; Andrew G. Winter; Chris Stark; Julie Nixon; Lindsay Ramage; Nadine Kolas; Lara O'Donnell; Teresa Reguly; Ashton Breitkreutz; et al. (Nucleic Acids Res., 2013)

The BioGRID interaction database: 2015 update. - Andrew Chatr-aryamontri; Bobby-Joe Breitkreutz; Rose Oughtred; Lorrie Boucher; Sven Heinicke; Daici Chen; Chris Stark; Ashton Breitkreutz; Nadine Kolas; Lara O'Donnell; Teresa Reguly; Julie Nixon; et al. (Nucleic Acids Res., 2015)

BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID. - Sun Kim; Rezarta Islamaj Dogan; Andrew Chatr-aryamontri; Christie S. Chang; Rose Oughtred; Jennifer M. Rust; Riza Batista-Navarro; Jacob Carter; Sophia Ananiadou; Sérgio Matos; André Santos; David Campos 001; et al. (Database J. Biol. Databases Curation, 2016)

The BioC-BioGRID corpus: full text articles annotated for curation of protein-protein and genetic interactions. - Rezarta Islamaj Dogan; Sun Kim; Andrew Chatr-aryamontri; Christie S. Chang; Rose Oughtred; Jennifer M. Rust; W. John Wilbur; Donald C. Comeau; Kara Dolinski; Mike Tyers (Database J. Biol. Databases Curation, 2017)

The BioGRID interaction database: 2017 update. - Andrew Chatr-aryamontri; Rose Oughtred; Lorrie Boucher; Jennifer M. Rust; Christie S. Chang; Nadine Kolas; Lara O'Donnell; Sara Oster; Chandra L. Theesfeld; Adnane Sellam; Chris Stark; Bobby-Joe Breitkreutz; et al. (Nucleic Acids Res., 2017)

The BioGRID interaction database: 2019 update. - Rose Oughtred; Chris Stark; Bobby-Joe Breitkreutz; Jennifer M. Rust; Lorrie Boucher; Christie S. Chang; Nadine Kolas; Lara O'Donnell; Genie Leung; Rochelle McAdam; Frederick Zhang; Sonam Dolma; et al. (Nucleic Acids Res., 2019)

Overview of the COVID-19 text mining tool interactive demonstration track in BioCreative VII. - Andrew Chatr-aryamontri; Lynette Hirschman; Karen E. Ross; Rose Oughtred; Martin Krallinger; Kara Dolinski; Mike Tyers; Tonia Korves; Cecilia N. Arighi (Database J. Biol. Databases Curation, 2022)

RECOVER: sequential model optimization platform for combination drug repurposing identifies novel synergistic compounds in vitro. - Paul Bertin; Jarrid Rector-Brooks; Deepak Sharma; Thomas Gaudelet; Andrew Anighoro; Torsten Gross; Francisco Martinez-Pena; Eileen L. Tang; Suraj M. S; Cristian Regep; Jeremy B. R. Hayter; Maksym Korablyov; et al. (CoRR, 2022)

Graph-Based Active Machine Learning Method for Diverse and Novel Antimicrobial Peptides Generation and Selection. - Bonaventure F. P. Dossou; Dianbo Liu; Xu Ji; Moksh Jain; Almer M. van der Sloot; Roger Palou; Michael Tyers; Yoshua Bengio (CoRR, 2022)

RGFN: Synthesizable Molecular Generation Using GFlowNets. - Michal Koziarski; Andrei Rekesh; Dmytro Shevchuk; Almer van der Sloot; Piotr Gainski; Yoshua Bengio; Cheng-Hao Liu; Mike Tyers; Robert A. Batey (NeurIPS, 2024)

Generative Active Learning for the Search of Small-molecule Protein Binders. - Maksym Korablyov; Cheng-Hao Liu; Moksh Jain; Almer M. van der Sloot; Eric Jolicoeur; Edward Ruediger; Andrei Cristian Nica; Emmanuel Bengio; Kostiantyn Lapchevskyi; Daniel St-Cyr; Doris Alexandra Schuetz; Victor Ion Butoi; et al. (CoRR, 2024)

Scalable and Cost-Efficient de Novo Template-Based Molecular Generation. - Piotr Gainski; Oussama Boussif; Andrei Rekesh; Dmytro Shevchuk; Ali Parviz; Mike Tyers; Robert A. Batey; Michal Koziarski (CoRR, 2025)

SynCoGen: Synthesizable 3D Molecule Generation via Joint Reaction and Coordinate Modeling. - Andrei Rekesh; Miruna T. Cretu; Dmytro Shevchuk; Vignesh Ram Somnath; Pietro Liò; Robert A. Batey; Mike Tyers; Michal Koziarski; Cheng-Hao Liu (CoRR, 2025)