Serially-concatenated LDGM codes for correlated sources over gaussian broadcast channels. - Mikel Hernaez; Pedro M. Crespo; Javier Del Ser; Javier Garcia-Frías (IEEE Commun. Lett., 2009)

Joint Turbo Coding and Source-Controlled Modulation of Cycle-Stationary Sources in the Bandwidth-Limited Regime. - Idoia Ochoa; Pedro M. Crespo; Javier Del Ser; Mikel Hernaez (MOBILIGHT, 2010)

Erratum to "serially-concatenated LDGM codes for correlated sources over Gaussian broadcast channels". - Mikel Hernaez; Pedro M. Crespo; Javier Del Ser; Javier Garcia-Frías (IEEE Commun. Lett., 2010)

LDPC Codes for Non-Uniform Memoryless Sources and Unequal Energy Allocation. - Idoia Ochoa; Pedro M. Crespo; Mikel Hernaez (IEEE Commun. Lett., 2010)

Turbo joint source-channel coding of non-uniform memoryless sources in the bandwidth-limited regime. - Idoia Ochoa; Pedro M. Crespo; Javier Del Ser; Mikel Hernaez (IEEE Commun. Lett., 2010)

A Novel Scheme for Message-Forwarding in Multi-Hop Ad-Hoc Wireless Networks. - Mikel Hernaez; Pedro M. Crespo (VTC Spring, 2011)

Joint Non-Binary LDPC-BICM and Network Coding with Iterative Decoding for the Multiple Access Relay Channel. - Mikel Hernaez; Pedro M. Crespo; Javier Del Ser (VTC Spring, 2011)

Flexible Channel Coding Approach for Short-Length Codewords. - Mikel Hernaez; Pedro M. Crespo; Javier Del Ser (IEEE Commun. Lett., 2012)

Teaching information theory via a simulation tool for communications systems. - Iker Alustiza; Mikel Hernaez; Xabier Insausti; Pedro M. Crespo (EDUCON, 2013)

Communication Services Empowered with a Classical Chaos Based Cryptosystem. - Gerard Vidal; Mikel Hernaez (Financial Cryptography, 2013)

A Decode-and-Forward Scheme for Multihop Wireless Networks. - Mikel Hernaez; Iker Alustiza; Pedro M. Crespo; Javier Del Ser (VTC Fall, 2013)

On the Design of a Novel Joint Network-Channel Coding Scheme for the Multiple Access Relay Channel. - Mikel Hernaez; Pedro M. Crespo; Javier Del Ser (IEEE J. Sel. Areas Commun., 2013)

Aligned genomic data compression via improved modeling. - Idoia Ochoa; Mikel Hernaez; Tsachy Weissman (J. Bioinform. Comput. Biol., 2014)

iDoComp: a compression scheme for assembled genomes. - Idoia Ochoa; Mikel Hernaez; Tsachy Weissman (Bioinform., 2015)

Design of a new scheme for multi-hop wireless networks using decode-and-forward strategy. - Iker Alustiza; Mikel Hernaez; Pedro M. Crespo (EURASIP J. Wirel. Commun. Netw., 2015)

An Evaluation Framework for Lossy Compression of Genome Sequencing Quality Values. - Claudio Alberti; Noah M. Daniels; Mikel Hernaez; Jan Voges; Rachel L. Goldfeder; Ana A. Hernandez-Lopez; Marco Mattavelli; Bonnie Berger (DCC, 2016)

A Cluster-Based Approach to Compression of Quality Scores. - Mikel Hernaez; Idoia Ochoa; Tsachy Weissman (DCC, 2016)

Denoising of Quality Scores for Boosted Inference and Reduced Storage. - Idoia Ochoa; Mikel Hernaez; Rachel L. Goldfeder; Tsachy Weissman; Euan A. Ashley (DCC, 2016)

CROMqs: an infinitesimal successive refinement lossy compressor for the quality scores. - Idoia Ochoa; Albert No; Mikel Hernaez; Tsachy Weissman (ITW, 2016)

Comment on: 'ERGC: an efficient referential genome compression algorithm'. - Sebastian Deorowicz; Szymon Grabowski; Idoia Ochoa; Mikel Hernaez; Tsachy Weissman (Bioinform., 2016)

GTRAC: fast retrieval from compressed collections of genomic variants. - Kedar Tatwawadi; Mikel Hernaez; Idoia Ochoa; Tsachy Weissman (Bioinform., 2016)

GeneComp, a New Reference-Based Compressor for SAM Files. - Reggy Long; Mikel Hernaez; Idoia Ochoa; Tsachy Weissman (DCC, 2017)

Effect of lossy compression of quality scores on variant calling. - Idoia Ochoa; Mikel Hernaez; Rachel L. Goldfeder; Tsachy Weissman; Euan A. Ashley (Briefings Bioinform., 2017)

QVZ: lossy compression of quality values. - Greg Malysa; Mikel Hernaez; Idoia Ochoa; Milind Rao; Karthik Ganesan 001; Tsachy Weissman (Bioinform., 2018)

FaStore: a space-saving solution for raw sequencing data. - Lukasz Roguski; Idoia Ochoa; Mikel Hernaez; Sebastian Deorowicz (Bioinform., 2018)

CALQ: compression of quality values of aligned sequencing data. - Jan Voges; Jörn Ostermann; Mikel Hernaez (Bioinform., 2018)

AliCo: A New Efficient Representation for SAM Files. - Idoia Ochoa; Hongyi Li; Florian Baumgarte; Charles Hergenrother; Jan Voges; Mikel Hernaez (DCC, 2019)

SPRING: a next-generation compressor for FASTQ data. - Shubham Chandak; Kedar Tatwawadi; Idoia Ochoa; Mikel Hernaez; Tsachy Weissman (Bioinform., 2019)

Comparison of single and module-based methods for modeling gene regulatory networks. - Mikel Hernaez; Charles Blatti; Olivier Gevaert (Bioinform., 2020)

GPress: a framework for querying general feature format (GFF) files and expression files in a compressed form. - Qingxi Meng; Idoia Ochoa; Mikel Hernaez (Bioinform., 2020)

GABAC: an arithmetic coding solution for genomic data. - Jan Voges; Tom Paridaens; Fabian Müntefering; Liudmila S. Mainzer; Brian Bliss; Mingyu Yang; Idoia Ochoa; Jan Fostier; Jörn Ostermann; Mikel Hernaez (Bioinform., 2020)

CROMqs: An infinitesimal successive refinement lossy compressor for the quality scores. - Albert No; Mikel Hernaez; Idoia Ochoa (J. Bioinform. Comput. Biol., 2020)

Towards scalable genomic data access. - Mikel Hernaez (Nat. Comput. Sci., 2021)

An Introduction to MPEG-G: The First Open ISO/IEC Standard for the Compression and Exchange of Genomic Sequencing Data. - Jan Voges; Mikel Hernaez; Marco Mattavelli; Jörn Ostermann (Proc. IEEE, 2021)

JIND: joint integration and discrimination for automated single-cell annotation. - Mohit Goyal; Guillermo Serrano; Josepmaria Argemi; Ilan Shomorony; Mikel Hernaez; Idoia Ochoa (Bioinform., 2022)

Towards a more inductive world for drug repurposing approaches. - Jesus de la Fuente Cedeño; Guillermo Serrano; Uxía Veleiro; Mikel Casals; Laura Vera; Marija Pizurica; Antonio Pineda-Lucena; Idoia Ochoa; Silve Vicent; Olivier Gevaert; Mikel Hernaez (CoRR, 2023)

Use of Beacon v2 for Improving Genomics Based Research in a Clinical Setting. - Daniel Naro; Jaime Delgado; Silvia Llorente; Mikel Hernaez (MIE, 2024)

Genie: The First Open-Source ISO/IEC Encoder for Genomic Data. - Fabian Müntefering; Yeremia Gunawan Adhisantoso; Shubham Chandak; Jörn Ostermann; Mikel Hernaez; Jan Voges (Zenodo, 2024)

Interpretable Causal Representation Learning for Biological Data in the Pathway Space. - Jesus de la Fuente Cedeño; Robert Lehmann 002; Carlos Ruiz-Arenas; Jan Voges; Irene Marín-Goñi; Xabier Martinez de Morentin; David Gomez-Cabrero; Idoia Ochoa; Jesper Tegnér; Vincenzo Lagani; Mikel Hernaez (ICLR, 2025)

Towards a more inductive world for drug repurposing approaches. - Jesus de la Fuente Cedeño; Guillermo Serrano; Uxía Veleiro; Mikel Casals; Laura Vera; Marija Pizurica; Nuria Gómez-Cebrián; Leonor Puchades-Carrasco; Antonio Pineda-Lucena; Idoia Ochoa; Silve Vicent; Olivier Gevaert; et al. (Nat. Mac. Intell., 2025)