Fast Algorithm for Optimal Aligning of Symbol Sequences. - Mikhail A. Roytberg (Mathematical Methods Of Analysis Of Biopolymer Sequences, 1992)

A search for common patterns in many sequences. - Mikhail A. Roytberg (Comput. Appl. Biosci., 1992)

SAMSON: a software package for the biopolymer primary structure analysis. - Nafisa N. Nazipova; Svetlana A. Shabalina; Aleksey Y. Ogurtsov; Alexey S. Kondrashov; Mikhail A. Roytberg; G. V. Buryakov; S. E. Vernoslov (Comput. Appl. Biosci., 1995)

Recognition of Genes in Human DNA Sequences. - Mikhail S. Gelfand; L. I. Podolsky; Tatiana V. Astakhova; Mikhail A. Roytberg (J. Comput. Biol., 1996)

Combinatorial Approaches to Gene Recognition. - Mikhail A. Roytberg; Tatiana V. Astakhova; Mikhail S. Gelfand (Comput. Chem., 1997)

Algorithms and software for support of gene identification experiments. - Sing-Hoi Sze; Mikhail A. Roytberg; Mikhail S. Gelfand; Andrey A. Mironov; Tatiana V. Astakhova; Pavel A. Pevzner (Bioinform., 1998)

Bayesian Approach to DNA Segmentation into Regions with Different Average Nucleotide Composition. - Vsevolod J. Makeev; Vasily Ramensky; Mikhail S. Gelfand; Mikhail A. Roytberg; Vladimir G. Tumanyan (JOBIM, 2000)

DNA Segmentation Through the Bayesian Approach. - Vasily Ramensky; Vsevolod J. Makeev; Mikhail A. Roytberg; Vladimir G. Tumanyan (J. Comput. Biol., 2000)

Segmentation of long genomic sequences into domains with homogeneous composition with BASIO software. - Vasily Ramensky; Vsevolod J. Makeev; Mikhail A. Roytberg; Vladimir G. Tumanyan (Bioinform., 2001)

OWEN: aligning long collinear regions of genomes. - Aleksey Y. Ogurtsov; Mikhail A. Roytberg; Svetlana A. Shabalina; Alexey S. Kondrashov (Bioinform., 2002)

A hierarchical approach to aligning collinear regions of genomes. - Mikhail A. Roytberg; Aleksey Y. Ogurtsov; Svetlana A. Shabalina; Alexey S. Kondrashov (Bioinform., 2002)

Multi-seed Lossless Filtration (Extended Abstract). - Gregory Kucherov; Laurent Noé; Mikhail A. Roytberg (CPM, 2004)

Multiseed Lossless Filtration. - Gregory Kucherov; Laurent Noé; Mikhail A. Roytberg (IEEE ACM Trans. Comput. Biol. Bioinform., 2005)

Analysis of internal loops within the RNA secondary structure in almost quadratic time. - Aleksey Y. Ogurtsov; Svetlana A. Shabalina; Alexey S. Kondrashov; Mikhail A. Roytberg (Bioinform., 2006)

A unifying framework for seed sensitivity and its application to subset seeds (Extended abstract) - Gregory Kucherov; Laurent Noé; Mikhail A. Roytberg (CoRR, 2006)

An Overview of the Algorithmic Session of MCCMB'05. - Gregory Kucherov; Andrey A. Mironov; Mikhail A. Roytberg (J. Bioinform. Comput. Biol., 2006)

A Unifying Framework for Seed Sensitivity and its Application to Subset Seeds. - Gregory Kucherov; Laurent Noé; Mikhail A. Roytberg (J. Bioinform. Comput. Biol., 2006)

Subset Seed Automaton. - Gregory Kucherov; Laurent Noé; Mikhail A. Roytberg (CIAA, 2007)

Exact p-value calculation for heterotypic clusters of regulatory motifs and its application in computational annotation of cis-regulatory modules. - Valentina Boeva; Julien Clément 001; Mireille Régnier; Mikhail A. Roytberg; Vsevolod J. Makeev (Algorithms Mol. Biol., 2007)

Locality and Gaps in RNA Comparison. - Rolf Backofen; Shihyen Chen; Danny Hermelin; Gad M. Landau; Mikhail A. Roytberg; Oren Weimann; Kaizhong Zhang (J. Comput. Biol., 2007)

Analysis of Sequence Conservation at Nucleotide Resolution. - Saurabh Asthana; Mikhail A. Roytberg; John A. Stamatoyannopoulos; Shamil R. Sunyaev (PLoS Comput. Biol., 2007)

Efficient Seeding Techniques for Protein Similarity Search. - Mikhail A. Roytberg; Anna Gambin; Laurent Noé; Slawomir Lasota 001; Eugenia Furletova; Ewa Szczurek; Gregory Kucherov (BIRD, 2008)

Reconstruction of Genuine Pair-Wise Sequence Alignment. - Valery Polyanovsky; Mikhail A. Roytberg; Vladimir G. Tumanyan (J. Comput. Biol., 2008)

On Subset Seeds for Protein Alignment. - Mikhail A. Roytberg; Anna Gambin; Laurent Noé; Slawomir Lasota 001; Eugenia Furletova; Ewa Szczurek; Gregory Kucherov (IEEE ACM Trans. Comput. Biol. Bioinform., 2009)

Library of Disordered Patterns in 3D Protein Structures. - Michail Yu. Lobanov; Eugenia Furletova; Natalya S. Bogatyreva; Mikhail A. Roytberg; Oxana V. Galzitskaya (PLoS Comput. Biol., 2010)

Quality of Algorithms for Sequence Comparison. - Mikhail A. Roytberg (PReMI, 2011)

Comparative analysis of the quality of a global algorithm and a local algorithm for alignment of two sequences. - Valery Polyanovsky; Mikhail A. Roytberg; Vladimir G. Tumanyan (Algorithms Mol. Biol., 2011)

Analysis of pattern overlaps and exact computation of P-values of pattern occurrences numbers: case of Hidden Markov Models. - Mireille Régnier; Evgenia Furletova; Victor Yakovlev; Mikhail A. Roytberg (Algorithms Mol. Biol., 2014)

Report on CPM 2014. - Mikhail A. Roytberg (Bull. EATCS, 2015)