Systems biology approach for mapping the response of human urothelial cells to infection by Enterococcus faecalis. - Mikhail G. Dozmorov; Kimberly D. Kyker; Ricardo Saban; Nathan Shankar; Arto S. Baghdayan; Michael Centola; Robert E. Hurst (BMC Bioinform., 2007)

From microarray to biology: an integrated experimental, statistical and in silico analysis of how the extracellular matrix modulates the phenotype of cancer cells. - Mikhail G. Dozmorov; Kimberly D. Kyker; Paul J. Hauser; Ricardo Saban; David D. Buethe; Igor Dozmorov; Michael Centola; Daniel J. Culkin; Robert E. Hurst (BMC Bioinform., 2008)

Predicting gene ontology from a global meta-analysis of 1-color microarray experiments. - Mikhail G. Dozmorov; Cory B. Giles; Jonathan D. Wren (BMC Bioinform., 2011)

High-throughput processing and normalization of one-color microarrays for transcriptional meta-analyses. - Mikhail G. Dozmorov; Jonathan D. Wren (BMC Bioinform., 2011)

Proceedings of the 2011 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference. - Jonathan D. Wren; Doris M. Kupfer; Edward J. Perkins; Susan Bridges; Stephen Winters-Hilt; Mikhail G. Dozmorov; Ulisses M. Braga-Neto (BMC Bioinform., 2011)

GenomeRunner: automating genome exploration. - Mikhail G. Dozmorov; Lukas R. Cara; Cory B. Giles; Jonathan D. Wren (Bioinform., 2012)

Proceedings of the 2012 MidSouth computational biology and bioinformatics society (MCBIOS) conference. - Jonathan D. Wren; Mikhail G. Dozmorov; Dennis Burian; Rakesh Kaundal; Susan Bridges; Doris M. Kupfer (BMC Bioinform., 2012)

Systematic classification of non-coding RNAs by epigenomic similarity. - Mikhail G. Dozmorov; Cory B. Giles; Kristi A. Koelsch; Jonathan D. Wren (BMC Bioinform., 2013)

mirCoX: a database of miRNA-mRNA expression correlations derived from RNA-seq meta-analysis. - Cory B. Giles; Reshmi Girijadevi; Mikhail G. Dozmorov; Jonathan D. Wren (BMC Bioinform., 2013)

Proceedings of the 2013 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference. - Jonathan D. Wren; Mikhail G. Dozmorov; Dennis Burian; Rakesh Kaundal; Andy D. Perkins; Edward J. Perkins; Doris M. Kupfer; Gordon K. Springer (BMC Bioinform., 2013)

Proceedings of the 2014 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference. - Jonathan D. Wren; Mikhail G. Dozmorov; Dennis Burian; Andy D. Perkins; Chaoyang Zhang; Peter Hoyt; Rakesh Kaundal (BMC Bioinform., 2014)

Detrimental effects of duplicate reads and low complexity regions on RNA- and ChIP-seq data. - Mikhail G. Dozmorov; Indra Adrianto; Cory B. Giles; Edmund R. Glass; Stuart B. Glenn; Courtney Montgomery; Kathy L. Sivils; Lorin E. Olson; Tomoaki Iwayama; Willard M. Freeman; Christopher J. Lessard; Jonathan D. Wren (BMC Bioinform., 2015)

GenomeRunner web server: regulatory similarity and differences define the functional impact of SNP sets. - Mikhail G. Dozmorov; Lukas R. Cara; Cory B. Giles; Jonathan D. Wren (Bioinform., 2016)

Improving sensitivity of linear regression-based cell type-specific differential expression deconvolution with per-gene vs. global significance threshold. - Edmund R. Glass; Mikhail G. Dozmorov (BMC Bioinform., 2016)

Proceedings of the 2016 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference. - Jonathan D. Wren; Inimary T. Toby; Huxiao Hong; Bindu Nanduri; Rakesh Kaundal; Mikhail G. Dozmorov; Shraddha Thakkar (BMC Bioinform., 2016)

Epigenomic annotation-based interpretation of genomic data: from enrichment analysis to machine learning. - Mikhail G. Dozmorov (Bioinform., 2017)

Proceedings of the 2017 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference. - Jonathan D. Wren; Mikhail G. Dozmorov; Inimary T. Toby; Bindu Nanduri; Ramin Homayouni; Prashanti Manda; Shraddha Thakkar (BMC Bioinform., 2017)

HiCcompare: an R-package for joint normalization and comparison of HI-C datasets. - John C. Stansfield; Kellen Garrison Cresswell; Vladimir I. Vladimirov; Mikhail G. Dozmorov (BMC Bioinform., 2018)

Disease classification: from phenotypic similarity to integrative genomics and beyond. - Mikhail G. Dozmorov (Briefings Bioinform., 2019)

multiHiCcompare: joint normalization and comparative analysis of complex Hi-C experiments. - John C. Stansfield; Kellen Garrison Cresswell; Mikhail G. Dozmorov (Bioinform., 2019)

SpectralTAD: an R package for defining a hierarchy of topologically associated domains using spectral clustering. - Kellen Garrison Cresswell; John C. Stansfield; Mikhail G. Dozmorov (BMC Bioinform., 2020)

Correction to: SpectralTAD: an R package for defining a hierarchy of topologically associated domains using spectral clustering. - Kellen Garrison Cresswell; John C. Stansfield; Mikhail G. Dozmorov (BMC Bioinform., 2020)

A method for estimating coherence of molecular mechanisms in major human disease and traits. - Mikhail G. Dozmorov; Kellen Garrison Cresswell; Silviu-Alin Bacanu; Carl F. Craver; Mark Reimers; Kenneth S. Kendler (BMC Bioinform., 2020)

preciseTAD: a transfer learning framework for 3D domain boundary prediction at base-pair resolution. - Spiro C. Stilianoudakis; Maggie A. Marshall; Mikhail G. Dozmorov (Bioinform., 2022)

excluderanges: exclusion sets for T2T-CHM13, GRCm39, and other genome assemblies. - Jonathan D. Ogata; Wancen Mu; Eric S. Davis; Bingjie Xue; J. Chuck Harrell; Nathan C. Sheffield; Douglas H. Phanstiel; Michael I. Love; Mikhail G. Dozmorov (Bioinform., 2023)

matchRanges: generating null hypothesis genomic ranges via covariate-matched sampling. - Eric S. Davis; Wancen Mu; Stuart Lee; Mikhail G. Dozmorov; Michael I. Love; Douglas H. Phanstiel (Bioinform., 2023)

bootRanges: flexible generation of null sets of genomic ranges for hypothesis testing. - Wancen Mu; Eric S. Davis; Stuart Lee; Mikhail G. Dozmorov; Douglas H. Phanstiel; Michael I. Love (Bioinform., 2023)

Machine and deep learning methods for predicting 3D genome organization. - Brydon P. G. Wall; My Nguyen; J. Chuck Harrell; Mikhail G. Dozmorov (CoRR, 2024)