Smooth orientation-dependent scoring function for coarse-grained protein quality assessment. - Mikhail Karasikov; Guillaume Pagès; Sergei Grudinin (Bioinform., 2019)

Dynamic compression schemes for graph coloring. - Harun Mustafa; Ingo Schilken; Mikhail Karasikov; Carsten Eickhoff; Gunnar Rätsch; André Kahles (Bioinform., 2019)

Communication-Efficient Jaccard similarity for High-Performance Distributed Genome Comparisons. - Maciej Besta; Raghavendra Kanakagiri; Harun Mustafa; Mikhail Karasikov; Gunnar Rätsch; Torsten Hoefler; Edgar Solomonik (IPDPS, 2020)

Sparse Binary Relation Representations for Genome Graph Annotation. - Mikhail Karasikov; Harun Mustafa; Amir Joudaki; Sara Javadzadeh-No; Gunnar Rätsch; André Kahles (J. Comput. Biol., 2020)

Topology-based sparsification of graph annotations. - Daniel Danciu; Mikhail Karasikov; Harun Mustafa; André Kahles; Gunnar Rätsch (Bioinform., 2021)

Lossless Indexing with Counting de Bruijn Graphs. - Mikhail Karasikov; Harun Mustafa; Gunnar Rätsch; André Kahles (RECOMB, 2022)

Scalable Annotated Genome Graphs for Representing Sequence Data. - Mikhail Karasikov (2023)

Label-guided seed-chain-extend alignment on annotated De Bruijn graphs. - Harun Mustafa; Mikhail Karasikov; Nika Mansouri-Ghiasi; Gunnar Rätsch; André Kahles (Bioinform., 2024)

Towards Large-Scale Training of Pathology Foundation Models. - kaiko ai; Nanne Aben; Edwin D. de Jong; Ioannis Gatopoulos; Nicolas Känzig; Mikhail Karasikov; Axel Lagré; Roman Moser; Joost van Doorn; Fei Tang (CoRR, 2024)

Training state-of-the-art pathology foundation models with orders of magnitude less data. - Mikhail Karasikov; Joost van Doorn; Nicolas Känzig; Melis Erdal Cesur; Hugo Mark Horlings; Robert B. West; Fei Tang; Sebastian Otálora (CoRR, 2025)