Searching for amino acid sequence motifs among enzymes: the Enzyme- Reaction Database. - Mikita Suyama; A. Ogiwara; Takaaki Nishioka; J. Oda (Comput. Appl. Biosci., 1993)

A method for comparing circular genomes from gene locations: application to mitochondrial genomes. - Katsuhisa Horimoto; Mikita Suyama; Hiroyuki Toh; Kentaro Mori; Jinya Otsuka (Bioinform., 1998)

HUGE: a database for human large proteins identified by Kazusa cDNA sequencing project. - Mikita Suyama; Takahiro Nagase; Osamu Ohara (Nucleic Acids Res., 1999)

HUGE: a database for human large proteins identified in the Kazusa cDNA sequencing project. - Reiko Kikuno; Takahiro Nagase; Mikita Suyama; Mina Waki; Makoto Hirosawa; Osamu Ohara (Nucleic Acids Res., 2000)

DomCut: prediction of inter-domain linker regions in amino acid sequences. - Mikita Suyama; Osamu Ohara (Bioinform., 2003)

BLAST2GENE: a comprehensive conversion of BLAST output into independent genes and gene fragments. - Mikita Suyama; David Torrents; Peer Bork (Bioinform., 2004)

PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. - Mikita Suyama; David Torrents; Peer Bork (Nucleic Acids Res., 2006)

Identification and Analysis of Genes and Pseudogenes within Duplicated Regions in the Human and Mouse Genomes. - Mikita Suyama; Eoghan D. Harrington; Peer Bork; David Torrents (PLoS Comput. Biol., 2006)

Mechanistic insights into mutually exclusive splicing in dynamin 1. - Mikita Suyama (Bioinform., 2013)

GenomeCons: a web server for manipulating multiple genome sequence alignments and their consensus sequences. - Tetsuya Sato 003; Mikita Suyama (Bioinform., 2015)

DBTSS/DBKERO for integrated analysis of transcriptional regulation. - Ayako Suzuki; Shin Kawano; Toutai Mituyama; Mikita Suyama; Yae Kanai; Katsuhiko Shirahige; Hiroyuki Sasaki; Katsushi Tokunaga; Katsuya Tsuchihara; Sumio Sugano; Kenta Nakai; Yutaka Suzuki (Nucleic Acids Res., 2018)

Mapping of promoter usage QTL using RNA-seq data reveals their contributions to complex traits. - Naoto Kubota; Mikita Suyama (PLoS Comput. Biol., 2022)