Processing methods for differential analysis of LC/MS profile data. - Mikko Katajamaa; Matej Oresic (BMC Bioinform., 2005)

MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data. - Mikko Katajamaa; Jarkko Miettinen; Matej Oresic (Bioinform., 2006)

Normalization method for metabolomics data using optimal selection of multiple internal standards. - Marko Sysi-Aho; Mikko Katajamaa; Laxman Yetukuri; Matej Oresic (BMC Bioinform., 2007)

Bioinformatics strategies for lipidomics analysis: characterization of obesity related hepatic steatosis. - Laxman Yetukuri; Mikko Katajamaa; Gema Medina-Gómez; Tuulikki Seppänen-Laakso; Antonio Vidal-Puig; Matej Oresic (BMC Syst. Biol., 2007)