Iterative method for creating wavelet dictionaries. - Mikko Rautiainen; Jaakko Malmivuo (EUSIPCO, 2002)

Identification of Variant Compositions in Related Strains Without Reference. - Mikko Rautiainen; Leena Salmela; Veli Mäkinen (AlCoB, 2016)

A graph-based approach to diploid genome assembly. - Shilpa Garg; Mikko Rautiainen; Adam M. Novak; Erik Garrison; Richard Durbin; Tobias Marschall (Bioinform., 2018)

Bit-parallel sequence-to-graph alignment. - Mikko Rautiainen; Veli Mäkinen; Tobias Marschall (Bioinform., 2019)

Sequence to graph alignment. - Mikko Rautiainen (2020)

MBG: Minimizer-based sparse de Bruijn Graph construction. - Mikko Rautiainen; Tobias Marschall (Bioinform., 2021)