Multiple Flexible Alignment with SEAL: A Study of Molecules Acting on the Colchicine Binding Site. - Miklos Feher; Jonathan M. Schmidt (J. Chem. Inf. Comput. Sci., 2000)

Identifying potential binding modes and explaining partitioning behavior using flexible alignments and multidimensional scaling. - Miklos Feher; Jonathan M. Schmidt (J. Comput. Aided Mol. Des., 2001)

Metric and Multidimensional Scaling: Efficient Tools for Clustering Molecular Conformations. - Miklos Feher; Jonathan M. Schmidt (J. Chem. Inf. Comput. Sci., 2001)

BHB: A Simple Knowledge-Based Scoring Function to Improve the Efficiency of Database Screening. - Miklos Feher; Eugen Deretey; Samir Roy (J. Chem. Inf. Comput. Sci., 2003)

Property Distributions: Differences between Drugs, Natural Products, and Molecules from Combinatorial Chemistry. - Miklos Feher; Jonathan M. Schmidt (J. Chem. Inf. Comput. Sci., 2003)

Fuzzy Clustering as a Means of Selecting Representative Conformers and Molecular Alignments. - Miklos Feher; Jonathan M. Schmidt (J. Chem. Inf. Comput. Sci., 2003)

The Use of Consensus Scoring in Ligand-Based Virtual Screening. - J. Christian Baber; William A. Shirley; Yinghong Gao; Miklos Feher (J. Chem. Inf. Model., 2006)

Novel 2D Fingerprints for Ligand-Based Virtual Screening. - Todd Ewing; J. Christian Baber; Miklos Feher (J. Chem. Inf. Model., 2006)

The effect of numerical error on the reproducibility of molecular geometry optimizations. - Christopher I. Williams; Miklos Feher (J. Comput. Aided Mol. Des., 2008)

Effect of Input Differences on the Results of Docking Calculations. - Miklos Feher; Christopher I. Williams (J. Chem. Inf. Model., 2009)

Reducing Docking Score Variations Arising from Input Differences. - Miklos Feher; Christopher I. Williams (J. Chem. Inf. Model., 2010)

Structural Chemistry of the Histone Methyltransferases Cofactor Binding Site. - Valérie Campagna-Slater; Man Wai Mok; Kong T. Nguyen; Miklos Feher; Rafael Najmanovich; Matthieu Schapira (J. Chem. Inf. Model., 2011)

Numerical Errors and Chaotic Behavior in Docking Simulations. - Miklos Feher; Christopher I. Williams (J. Chem. Inf. Model., 2012)

Numerical Errors in Minimization Based Binding Energy Calculations. - Miklos Feher; Christopher I. Williams (J. Chem. Inf. Model., 2012)

AutoPH4: An Automated Method for Generating Pharmacophore Models from Protein Binding Pockets. - Siduo Jiang; Miklos Feher; Christopher I. Williams; Brian Cole; David E. Shaw (J. Chem. Inf. Model., 2020)