Novel Treatment of Conformational Flexibility Using Interval Analysis. - Zsuzsanna Szabó; Miklós Vargyas; A. Peter Johnson (J. Chem. Inf. Comput. Sci., 2000)

Making "Real" Molecules in Virtual Space. - György Pirok; Nóra Máté; Jeno Varga; József Szegezdi; Miklós Vargyas; Szilárd Dóránt; Ferenc Csizmadia (J. Chem. Inf. Model., 2006)

PBEQ-Solver for online visualization of electrostatic potential of biomolecules. - Sunhwan Jo; Miklós Vargyas; Judit Vasko-Szedlar; Benoît Roux; Wonpil Im (Nucleic Acids Res., 2008)

Flexible alignment in 3D and its applications. - Adrián Kalászi; Gábor Imre; Miklós Vargyas (J. Cheminformatics, 2011)