Cognitive Robot Education and Image Processing Research at the Czech Technical University of Prague. - Milan Sonka (Artificial Intelligence in Higher Education, 1989)

Simultaneous detection of both coronary borders. - Milan Sonka; Christopher J. Wilbricht; Steven R. Fleagle; Satish K. Tadikonda; Michael D. Winniford; Steve M. Collins (IEEE Trans. Medical Imaging, 1993)

Lumen centerline detection in complex coronary angiograms. - Milan Sonka; Michael D. Winniford; Xiangmin Zhang; Steve M. Collins (IEEE Trans. Biomed. Eng., 1994)

Image processing, analysis and machine vision. - Milan Sonka; Václav Hlavác; Roger Boyle (Chapman and Hall, 1995)

Tree pruning strategy in automated detection of coronary trees in cineangiograms. - Xiangmin Zhang; Steve M. Collins; Milan Sonka (ICIP (3), 1995)

Robust simultaneous detection of coronary borders in complex images. - Milan Sonka; Michael D. Winniford; Steve M. Collins (IEEE Trans. Medical Imaging, 1995)

Segmentation of intravascular ultrasound images: a knowledge-based approach. - Milan Sonka; Xiangmin Zhang; Maria Siebes; Mark S. Bissing; Steven C. DeJong; Steve M. Collins; Charles R. McKay (IEEE Trans. Medical Imaging, 1995)

Fuzzy logic approach to extraction of intrathoracic airway trees from three-dimensional CT images. - Wonkyu Park; Eric A. Hoffman; Milan Sonka (Image Processing, 1996)

A Fully Parallel 3D Thinning Algorithm and Its Applications. - C. Min Ma; Milan Sonka (Comput. Vis. Image Underst., 1996)

Rule-based detection of intrathoracic airway trees. - Milan Sonka; Wonkyu Park; Eric A. Hoffman (IEEE Trans. Medical Imaging, 1996)

Knowledge-based interpretation of MR brain images. - Milan Sonka; Satish K. Tadikonda; Steve M. Collins (IEEE Trans. Medical Imaging, 1996)

An Improved Active Shape Model: Handling Occlusion and Outliers. - Nicolae Duta; Milan Sonka (ICIAP (1), 1997)

Local Three-Dimensional Shape-Preserving Smoothing without Shrinkage. - Chaohuang Zeng; Milan Sonka (ICIP (1), 1997)

Segmentation and Interpretation of MR Brain Images Using an Improved Knowledge-Based Active Shape Model. - Nicolae Duta; Milan Sonka (IPMI, 1997)

Adaptive Approach to Accurate Analysis of Small-Diameter Vessels in Cineangiograms. - Milan Sonka; G. K. Reddy; Michael D. Winniford; Steve M. Collins (IEEE Trans. Medical Imaging, 1997)

3-D Fusion of Biplane Angiography and Intravascular Ultrasound for Accurate Visualization and Volumetry. - Andreas Wahle; Guido P. M. Prause; Steven C. DeJong; Milan Sonka (MICCAI, 1998)

Automated follicle analysis in ovarian ultrasound. - Anthony Krivanek; Weidong Liang; Gordon E. Sarty; Roger A. Pierson; Milan Sonka (Image Processing, 1998)

3D catheter path reconstruction from biplane angiograms. - M. Carmen Molina; Guido P. M. Prause; Petia Radeva; Milan Sonka (Image Processing, 1998)

Teaching digital image processing and computer vision in a quantitative imaging electronic classroom. - Milan Sonka (Image Processing, 1998)

Segmentation and Interpretation of MR Brain Images: An Improved Active Shape Model. - Nicolae Duta; Milan Sonka (IEEE Trans. Medical Imaging, 1998)

Ovarian Ultrasound Image Analysis: Follicle Segmentation . - Anthony Krivanek; Milan Sonka (IEEE Trans. Medical Imaging, 1998)

Segmentation of Intrathoracic Airway Trees: A Fuzzy Logic Approach. - Wonkyu Park; Eric A. Hoffman; Milan Sonka (IEEE Trans. Medical Imaging, 1998)

Tissue Characterization in Intravascular Ultrasound Images. - Xiangmin Zhang; Charles R. McKay; Milan Sonka (IEEE Trans. Medical Imaging, 1998)

Learning Shape Models from Examples Using Automatic Shape Clustering and Procrustes Analysis. - Nicolae Duta; Milan Sonka; Anil K. Jain 001 (IPMI, 1999)

Anatomical Modeling with Fuzzy Implicit Surfaces: Application to Automated Localization of the Heart and Lungs in Thoracic MR Images. - Boudewijn P. F. Lelieveldt; Milan Sonka; Lizann Bolinger; Thomas D. Scholz; Hein W. M. Kayser; Rob J. van der Geest; Johan H. C. Reiber (IPMI, 1999)

Automated calculation of the axial orientation of intravascular ultrasound images by fusion with biplane angiography. - Andreas Wahle; Guido P. M. Prause; Clemens von Birgelen; Raimund Erbel; Milan Sonka (Image Processing, 1999)

Medical image segmentation: Automated design of border detection criteria from examples. - Marek Brejl; Milan Sonka (J. Electronic Imaging, 1999)

Fusion of angiography and intravascular ultrasound in vivo: establishing the absolute 3-D frame orientation. - Andreas Wahle; Guido P. M. Prause; Clemens von Birgelen; Raimund Erbel; Milan Sonka (IEEE Trans. Biomed. Eng., 1999)

Geometrically Correct 3-D Reconstruction of Intravascular Ultrasound Images by Fusion with Biplane Angiography - Methods and Validation. - Andreas Wahle; Guido P. M. Prause; Steven C. DeJong; Milan Sonka (IEEE Trans. Medical Imaging, 1999)

Segmentation of cardiac MR images: an active appearance model approach. - Steven C. Mitchell; Boudewijn P. F. Lelieveldt; Rob J. van der Geest; Jorrit A. Schaap; Johan H. C. Reiber; Milan Sonka (Image Processing, 2000)

Determination of the envelope function (maximum velocity curve) in Doppler ultrasound flow velocity diagrams. - Juerg Tschirren; Ronald M. Lauer; Milan Sonka (Image Processing, 2000)

Automated Initialization and Automated Design of Border Detection Criteria in Edge-Based Image Segmentation. - Marek Brejl; Milan Sonka (SSIAI, 2000)

Quantitative Measurements in Geometrically Correct Representations of Coronary Vessels in 3-D and 4-D. - Mark E. Olszewski; Ryan M. Long; Steven C. Mitchell; Andreas Wahle; Milan Sonka (SSIAI, 2000)

Directional 3D Edge Detection in Anisotropic Data: Detector Design and Performance Assessment. - Marek Brejl; Milan Sonka (Comput. Vis. Image Underst., 2000)

Analysis of Volumetric Images. - A. Ardeshir Goshtasby; Milan Sonka; Jayaram K. Udupa (Comput. Vis. Image Underst., 2000)

Anatomical Modeling with Fuzzy Implicit Surface Templates: Application to Automated Localization of the Heart and Lungs in Thoracic MR Volumes. - Boudewijn P. F. Lelieveldt; Milan Sonka; Lizann Bolinger; Thomas D. Scholz; Hein W. M. Kayser; Rob J. van der Geest; Johan H. C. Reiber (Comput. Vis. Image Underst., 2000)

Object Localization and Border Detection Criteria Design in Edge-Based Image Segmentation: Automated Learning from Examples. - Marek Brejl; Milan Sonka (IEEE Trans. Medical Imaging, 2000)

Active Appearance - Motion Models for fully automated endocardial contour detection in time sequences of echocardiograms. - Hans G. Bosch; Steven C. Mitchell; Boudewijn P. F. Lelieveldt; Francisca Nijland; Otto Kamp; Milan Sonka; Johan H. C. Reiber (CARS, 2001)

Time continuous segmentation of cardiac MR images using Active Appearance Motion Models. - Boudewijn P. F. Lelieveldt; Steven C. Mitchell; Rob J. van der Geest; Hans G. Bosch; Milan Sonka; Johan H. C. Reiber (CARS, 2001)

Cardiovascular image analysis: past, present and future. - Milan Sonka (CARS, 2001)

Visualization of human coronary arteries with quantification results from 3-D and 4-D computational hemodynamics based upon virtual endoscopy. - Andreas Wahle; Steven C. Mitchell; Sharan D. Ramaswamy; Krishnan B. Chandran; Milan Sonka (CARS, 2001)

Active Appearance Motion Model Segmentation. - Milan Sonka; Steven C. Mitchell; Boudewijn P. F. Lelieveldt; Johan G. Bosch; Rob J. van der Geest; Johan H. C. Reiber (Workshop on Digital and Computational Video, 2001)

Shape- and appearance-based segmentation of volumetric medical images. - Reinhard Beichel; Steven C. Mitchell; Erich Sorantin; Franz Leberl; A. Ardeshir Goshtasby; Milan Sonka (ICIP (2), 2001)

Time-Continuous Segmentation of Cardiac Image Sequences Using Active Appearance Motion Models. - Boudewijn P. F. Lelieveldt; Steven C. Mitchell; Johan G. Bosch; Rob J. van der Geest; Milan Sonka; Johan H. C. Reiber (IPMI, 2001)

Integrated System for Objective Assessment of Global and Regional Lung Structure. - Joseph M. Reinhardt; Junfeng Guo; Li Zhang; D. Bilgen; Shiying Hu; R. Uppaluri; Ryan M. Long; O. I. Saba; Geoffrey McLennan; Milan Sonka; Eric A. Hoffman (MICCAI, 2001)

Active appearance motion models for endocardial contour detection in time sequences of echocardiograms. - Hans G. Bosch; Steven C. Mitchell; Boudewijn P. F. Lelieveldt; Francisca Nijland; Otto Kamp; Milan Sonka; Johan H. C. Reiber (Image Processing, 2001)

Time-continuous segmentation of cardiac MR image sequences using active appearance motion models. - Steven C. Mitchell; Boudewijn P. F. Lelieveldt; Rob J. van der Geest; Hans G. Bosch; Johan H. C. Reiber; Milan Sonka (Image Processing, 2001)

Four-dimensional coronary morphology and computational hemodynamics. - Andreas Wahle; Steven C. Mitchell; Sharan D. Ramaswamy; Krishnan B. Chandran; Milan Sonka (Image Processing, 2001)

Multistage Hybrid Active Appearance Model Matching: Segmentation of Left and Right Ventricles in Cardiac MR Images. - Steven C. Mitchell; Boudewijn P. F. Lelieveldt; Rob J. van der Geest; Johan G. Bosch; Johan H. C. Reiber; Milan Sonka (IEEE Trans. Medical Imaging, 2001)

Handbook of Medical Imaging - Processing and Analysis I.N.. - Milan Sonka; J. Michael Fitzpatrick (IEEE Trans. Medical Imaging, 2001)

Automated Analysis of Doppler Ultrasound Velocity Flow Diagrams. - Juerg Tschirren; Ronald M. Lauer; Milan Sonka (IEEE Trans. Medical Imaging, 2001)

Integrated system for CT-based assessment of parenchymal lung disease. - Junfeng Guo; Joseph M. Reinhardt; Hiroko Kitaoka; Li Zhang; Milan Sonka; Geoffrey McLennan; Eric A. Hoffman (ISBI, 2002)

Volumetric quantification of coronary arteries reconstructed by fusion between intravascular ultrasound and biplane angiography. - Rubén Medina; Andreas Wahle; Mark E. Olszewski; Milan Sonka (ISBI, 2002)

Assessment of plaque stability by means of high-resolution MRI and finite element analyses of local stresses and strains. - Christian Schulze-Bauer; M. Auer; Rudolf Stollberger; Peter Regitnig; Milan Sonka; Gerhard A. Holzapfel (ISBI, 2002)

Automated Nomenclature Labeling of the Bronchial Tree in 3D-CT Lung Images. - Hiroko Kitaoka; Yongsup Park; Juerg Tschirren; Joseph M. Reinhardt; Milan Sonka; Geoffrey McLennan; Eric A. Hoffman (MICCAI (2), 2002)

Segmentation, Skeletonization, and Branchpoint Matching - A Fully Automated Quantitative Evaluation of Human Intrathoracic Airway Trees. - Juerg Tschirren; Kálmán Palágyi; Joseph M. Reinhardt; Eric A. Hoffman; Milan Sonka (MICCAI (2), 2002)

Diaphragm dome surface segmentation in CT data sets: a 3D active appearance model approach. - Reinhard Beichel; Georg Gotschuli; Erich Sorantin; Franz W. Leberl; Milan Sonka (Image Processing, 2002)

Fully automated endocardial contour detection in time sequences of echocardiograms by three-dimensional active appearance models. - Johan G. Bosch; Steven C. Mitchell; Boudewijn P. F. Lelieveldt; Francisca Nijland; Otto Kamp; Milan Sonka; Johan H. C. Reiber (Image Processing, 2002)

Segmentation of cardiac MR volume data using 3D active appearance models. - Steven C. Mitchell; Boudewijn P. F. Lelieveldt; Johan G. Bosch; Rob J. van der Geest; Johan H. C. Reiber; Milan Sonka (Image Processing, 2002)

Automatic Segmentation of Echocardiographic Sequences by Active Appearance Motion Models. - Johan G. Bosch; Steven C. Mitchell; Boudewijn P. F. Lelieveldt; Francisca Nijland; Otto Kamp; Milan Sonka; Johan H. C. Reiber (IEEE Trans. Medical Imaging, 2002)

3-D Active Appearance Models: Segmentation of Cardiac MR and Ultrasound Images. - Steven C. Mitchell; Johan G. Bosch; Boudewijn P. F. Lelieveldt; Rob J. van der Geest; Johan H. C. Reiber; Milan Sonka (IEEE Trans. Medical Imaging, 2002)

Image Processing and Analysis in Drug Discovery and Clinical Trials. - Milan Sonka; Michael Grunkin (IEEE Trans. Medical Imaging, 2002)

Automated Analysis of Brachial Ultrasound Image Sequences: Early Detection of Cardiovascular Disease via Surrogates of Endothelial Function. - Milan Sonka; Weidong Liang; Ronald M. Lauer (IEEE Trans. Medical Imaging, 2002)

Computer Aided Liver Surgery Planning Based on Augmented Reality Techniques. - Alexander Bornik; Reinhard Beichel; Bernhard Reitinger; Georg Gotschuli; Erich Sorantin; Franz Leberl; Milan Sonka (Bildverarbeitung für die Medizin, 2003)

Multi-view active appearance models for consistent segmentation of multiple standard views: application to long and short-axis cardiac MR images. - Boudewijn P. F. Lelieveldt; Mehmet Üzümcü; Rob J. van der Geest; Johan H. C. Reiber; Milan Sonka (CARS, 2003)

Integrated system for quantitative analysis of coronary plaque via data fusion of biplane angiography and intravascular ultrasound. - Mark E. Olszewski; Andreas Wahle; Rubén Medina; Steven C. Mitchell; Milan Sonka (CARS, 2003)

Computer-aided diagnosis via model-based shape analysis: cardiac. - Milan Sonka; Johan G. Bosch; Boudewijn P. F. Lelieveldt; Steven C. Mitchell; Johan H. C. Reiber (CARS, 2003)

Multi-view Active Appearance Models: Application to X-Ray LV Angiography and Cardiac MRI. - C. R. Oost; Boudewijn P. F. Lelieveldt; Mehmet Üzümcü; Hildo J. Lamb; Johan H. C. Reiber; Milan Sonka (IPMI, 2003)

Quantitative Analysis of Intrathoracic Airway Trees: Methods and Validation. - Kálmán Palágyi; Juerg Tschirren; Milan Sonka (IPMI, 2003)

ICA vs. PCA Active Appearance Models: Application to Cardiac MR Segmentation. - Mehmet Üzümcü; Alejandro F. Frangi; Milan Sonka; Johan H. C. Reiber; Boudewijn P. F. Lelieveldt (MICCAI (1), 2003)

Computer-aided liver surgery planning: an augmented reality approach. - Alexander Bornik; Reinhard Beichel; Bernhard Reitinger; Georg Gotschuli; Erich Sorantin; Franz Leberl; Milan Sonka (Image-Guided Procedures, 2003)

Estimating the actual dose delivered by intravascular coronary brachytherapy using geometrically correct 3D modeling. - Andreas Wahle; John J. Lopez; Edward C. Pennington; Sanford L. Meeks; Kathleen C. Braddy; James M. Fox; Theresa M. H. Brennan; John M. Buatti; James D. Rossen; Milan Sonka (Image-Guided Procedures, 2003)

Automated classification of wall motion abnormalities by principal component analysis of endocardial shape motion patterns in echocardiograms. - Johan G. Bosch; Francisca Nijland; Steven C. Mitchell; Boudewijn P. F. Lelieveldt; Otto Kamp; Milan Sonka; Johan H. C. Reiber (Image Processing, 2003)

Disease characterization of active appearance model coefficients. - Steven C. Mitchell; Boudewijn P. F. Lelieveldt; Hans G. Bosch; Johan H. C. Reiber; Milan Sonka (Image Processing, 2003)

Left ventricle contour detection in x-ray angiograms using multi-view active appearance models. - Elco Oost; Boudewijn P. F. Lelieveldt; Gerhard Koning; Milan Sonka; Johan H. C. Reiber (Image Processing, 2003)

Quantitative analysis of three-dimensional tubular tree structures. - Kálmán Palágyi; Juerg Tschirren; Milan Sonka (Image Processing, 2003)

Vascular MR segmentation: wall and plaque. - Fuxing Yang; Gerhard A. Holzapfel; Christian Schulze-Bauer; Rudolf Stollberger; Daniel Thedens; Lizann Bolinger; Alan Stolpen; Milan Sonka (Image Processing, 2003)

Editorial. - Jirí Jan; Milan Sonka; Ivo Provazník (EURASIP J. Adv. Signal Process., 2003)

Effects of vessel geometry and catheter position on dose delivery in intracoronary brachytherapy. - Andreas Wahle; John J. Lopez; Edward C. Pennington; Sanford L. Meeks; Kathleen Braddy; James M. Fox; Theresa Brennan; John M. Buatti; James D. Rossen; Milan Sonka (IEEE Trans. Biomed. Eng., 2003)

Segmentation of intravascular ultrasound images: a machine learning approach mimicking human vision. - Mark E. Olszewski; Andreas Wahle; Steven C. Mitchell; Milan Sonka (CARS, 2004)

Real-time three-dimensional digital Doppler method based on Gaussian control surface for measurement of flow volumes. - Honghai Zhang; Liping Bu; Alan Stolpen; Milan Sonka; Shuping Ge (CARS, 2004)

Globally Optimal Segmentation of Interacting Surfaces with Geometric Constraints. - Kang Li; Xiaodong Wu 001; Danny Z. Chen; Milan Sonka (CVPR (1), 2004)

Assessment of Intrathoracic Airway Trees: Methods and In Vivo Validation. - Kálmán Palágyi; Juerg Tschirren; Eric A. Hoffman; Milan Sonka (ECCV Workshops CVAMIA and MMBIA, 2004)

Quantitative Analysis of Circumferential Plaque Distribution in Human Coronary Arteries in Relation to Local Vessel Curvature. - Andreas Wahle; Mark E. Olszewski; Sarah C. Vigmostad; Rubén Medina; A. Ümit Coskun; Charles L. Feldman; Peter H. Stone; Kathleen Braddy; Theresa Brennan; James D. Rossen; Krishnan B. Chandran; Milan Sonka (ISBI, 2004)

Mitotic cell recognition with hidden Markov models. - Greg M. Gallardo; Fuxing Yang; Fiorenza Ianzini; Michael A. Mackey; Milan Sonka (Image-Guided Procedures, 2004)

Liver segment approximation in CT data for surgical resection planning. - Reinhard Beichel; Thomas Pock; Christian Janko; Roman B. Zotter; Bernhard Reitinger; Alexander Bornik; Kálmán Palágyi; Erich Sorantin; Georg Werkgartner; Horst Bischof; Milan Sonka (Image Processing, 2004)

Efficient optimal surface detection: theory, implementation, and experimental validation. - Kang Li; Xiaodong Wu 001; Zhixiang Chen 001; Milan Sonka (Image Processing, 2004)

Segmentation and quantitative analysis of the living tumor cells using large-scale digital cell analysis system. - Fuxing Yang; Michael A. Mackey; Fiorenza Ianzini; Greg M. Gallardo; Milan Sonka (Image Processing, 2004)

Computerized detection of pulmonary nodules using cellular neural networks in CT images. - Xiangwei Zhang; Geoffrey McLennan; Eric A. Hoffman; Milan Sonka (Image Processing, 2004)

Curvature estimation of arbitrary discrete 3D surfaces using partial derivatives based on distance maps. - Xiangwei Zhang; Milan Sonka (Image Processing, 2004)

Interactive virtual endoscopy in coronary arteries based on multimodality fusion. - Andreas Wahle; Mark E. Olszewski; Milan Sonka (IEEE Trans. Medical Imaging, 2004)

A Robust Matching Algorithm for Active Appearance Models. - Reinhard Beichel; Horst Bischof; Georg Langs; Milan Sonka (Bildverarbeitung für die Medizin, 2005)

Automated Segmentation of X-ray Left Ventricular Angiograms Using Multi-View Active Appearance Models and Dynamic Programming. - Elco Oost; Gerhard Koning; Milan Sonka; Johan H. C. Reiber; Boudewijn P. F. Lelieveldt (FIMH, 2005)

Analysis of the Interdependencies Among Plaque Development, Vessel Curvature, and Wall Shear Stress in Coronary Arteries. - Andreas Wahle; John J. Lopez; Mark E. Olszewski; Sarah C. Vigmostad; Krishnan B. Chandran; James D. Rossen; Milan Sonka (FIMH, 2005)

Neural network and principal component analyses of highly variable myocardial mechanical waveforms derived from echocardiographic ultrasound images. - Eileen McMahon; Josef Korinek; Honghai Zhang; Milan Sonka; Armando Manduca; Marek Belohlavek (IJCNN, 2005)

Robust Active Appearance Model Matching. - Reinhard Beichel; Horst Bischof; Franz Leberl; Milan Sonka (IPMI, 2005)

Simultaneous Segmentation of Multiple Closed Surfaces Using Optimal Graph Searching. - Kang Li; Steven Millington; Xiaodong Wu 001; Danny Z. Chen; Milan Sonka (IPMI, 2005)

Automated Detection of Small-Size Pulmonary Nodules Based on Helical CT Images. - Xiangwei Zhang; Geoffrey McLennan; Eric A. Hoffman; Milan Sonka (IPMI, 2005)

Cell Segmentation, Tracking, and Mitosis Detection Using Temporal Context. - Fuxing Yang; Michael A. Mackey; Fiorenza Ianzini; Greg Gallardo; Milan Sonka (MICCAI, 2005)

Multidimensional segmentation of coronary intravascular ultrasound images using knowledge-based methods. - Mark Eric Olszewski; Andreas Wahle; Sarah C. Vigmostad; Milan Sonka (Image Processing, 2005)

A complete CAD system for pulmonary nodule detection in high resolution CT images. - Xiangwei Zhang; Geoffrey McLennan; Eric A. Hoffman; Milan Sonka (Image Processing, 2005)

3D segmentation of non-isolated pulmonary nodules in high resolution CT images. - Xiangwei Zhang; Geoffrey McLennan; Eric A. Hoffman; Milan Sonka (Image Processing, 2005)

Robust active appearance models and their application to medical image analysis. - Reinhard Beichel; Horst Bischof; Franz Leberl; Milan Sonka (IEEE Trans. Medical Imaging, 2005)

Intrathoracic airway trees: segmentation and airway morphology analysis from low-dose CT scans. - Juerg Tschirren; Eric A. Hoffman; Geoffrey McLennan; Milan Sonka (IEEE Trans. Medical Imaging, 2005)

Matching and anatomical labeling of human airway tree. - Juerg Tschirren; Geoffrey McLennan; Kálmán Palágyi; Eric A. Hoffman; Milan Sonka (IEEE Trans. Medical Imaging, 2005)

3D Active Shape and Appearance Models in Cardiac Image Analysis. - B. Legeveldt; Alejandro F. Frangi; Steven C. Mitchell; Hans C. van Assen; Sebastián Ordas; Johan H. C. Reiber; Milan Sonka (Handbook of Mathematical Models in Computer Vision, 2006)

Automated 4D Segmentation of Aortic Magnetic Resonance Images. - Fei Zhao; Honghai Zhang; Andreas Wahle; Thomas D. Scholz; Milan Sonka (BMVC, 2006)

Detection of Connective Tissue Disorders from 3D Aortic MR Images Using Independent Component Analysis. - Michael Sass Hansen; Fei Zhao; Honghai Zhang; Nicholas E. Walker; Andreas Wahle; Thomas D. Scholz; Milan Sonka (CVAMIA, 2006)

Segmentation of the Surfaces of the Retinal Layer from OCT Images. - Mona Haeker; Michael D. Abràmoff; Randy Kardon; Milan Sonka (MICCAI (1), 2006)

Automatic segmentation of pulmonary fissures in x-ray CT images using anatomic guidance. - Soumik Ukil; Milan Sonka; Joseph M. Reinhardt (Image Processing, 2006)

Computerized detection of pulmonary nodules using a combination of 3D global and local shape information based on helical CT images. - Xiangwei Zhang; Jonathan Stoeckel; Matthias Wolf 001; Pascal Cathier; Geoffrey McLennan; Eric A. Hoffman; Milan Sonka (Image Processing, 2006)

Quantitative analysis of two-phase 3D+time aortic MR images. - Fei Zhao; Honghai Zhang; Nicholas E. Walker; Fuxing Yang; Mark E. Olszewski; Andreas Wahle; Thomas D. Scholz; Milan Sonka (Image Processing, 2006)

Quantitative analysis of pulmonary airway tree structures. - Kálmán Palágyi; Juerg Tschirren; Eric A. Hoffman; Milan Sonka (Comput. Biol. Medicine, 2006)

Plaque development, vessel curvature, and wall shear stress in coronary arteries assessed by X-ray angiography and intravascular ultrasound. - Andreas Wahle; John J. Lopez; Mark E. Olszewski; Sarah C. Vigmostad; Krishnan B. Chandran; James D. Rossen; Milan Sonka (Medical Image Anal., 2006)

Optimal Surface Segmentation in Volumetric Images-A Graph-Theoretic Approach. - Kang Li; Xiaodong Wu 001; Danny Z. Chen; Milan Sonka (IEEE Trans. Pattern Anal. Mach. Intell., 2006)

Automated contour detection in X-ray left ventricular angiograms using multiview active appearance models and dynamic programming. - Elco Oost; Gerhard Koning; Milan Sonka; Pranobe V. Oemrawsingh; Johan H. C. Reiber; Boudewijn P. F. Lelieveldt (IEEE Trans. Medical Imaging, 2006)

MDCT-based 3-D texture classification of emphysema and early smoking related lung pathologies. - Ye Xu; Milan Sonka; Geoffrey McLennan; Junfeng Guo; Eric A. Hoffman (IEEE Trans. Medical Imaging, 2006)

Incorporation of Regional Information in Optimal 3-D Graph Search with Application for Intraretinal Layer Segmentation of Optical Coherence Tomography Images. - Mona Haeker; Xiaodong Wu 001; Michael D. Abràmoff; Randy Kardon; Milan Sonka (IPMI, 2007)

Pulmonary CT Image Analysis and Computer Aided Detection. - Milan Sonka; Juerg Tschirren; Soumik Ukil; X. Zhang; Ye Xu; Joseph M. Reinhardt; Edwin J. R. van Beek; Geoffrey McLennan; Eric A. Hoffman (ISBI, 2007)

Use of Varying Constraints in Optimal 3-D Graph Search for Segmentation of Macular Optical Coherence Tomography Images. - Mona Haeker; Michael D. Abràmoff; Xiaodong Wu 001; Randy Kardon; Milan Sonka (MICCAI (1), 2007)

A New Method for Spherical Object Detection and Its Application to Computer Aided Detection of Pulmonary Nodules in CT Images. - Xiangwei Zhang; Jonathan Stoeckel; Matthias Wolf 001; Pascal Cathier; Geoffrey McLennan; Eric A. Hoffman; Milan Sonka (MICCAI (1), 2007)

Automated segmentation of intraretinal layers from macular optical coherence tomography images. - Mona Haeker; Milan Sonka; Randy Kardon; Vinay A. Shah; Xiaodong Wu 001; Michael D. Abràmoff (Image Processing, 2007)

Segmentation of the optic nerve head combining pixel classification and graph search. - Michael B. Merickel; Michael D. Abràmoff; Milan Sonka; Xiaodong Wu 001 (Image Processing, 2007)

Active index model: a unique approach for regional quantitative morphometry in longitudinal and cross-sectional studies. - Punam Kumar Saha; H. Zhang; Milan Sonka; Gary E. Christensen; Chamith S. Rajapakse (Image Processing, 2007)

The Layered Net Surface Problems in Discrete Geometry and Medical Image Segmentation. - Xiaodong Wu 001; Danny Z. Chen; Kang Li; Milan Sonka (Int. J. Comput. Geom. Appl., 2007)

Image processing, analysis and and machine vision (3. ed.). - Milan Sonka; Václav Hlavác; Roger Boyle (Thomson, 2008)

Globally optimal surface segmentation using regional properties of segmented objects. - Xin Dou; Xiaodong Wu 001; Andreas Wahle; Milan Sonka (CVPR, 2008)

Knowledge-Based Approaches to Quantitative Medical Image Analysis and Image-Based Decision Making. - Milan Sonka (FAW, 2008)

Vessel segmentation in 3D spectral OCT scans of the retina. - Meindert Niemeijer; Mona Kathryn Garvin; Bram van Ginneken; Milan Sonka; Michael D. Abràmoff (Image Processing, 2008)

Intraretinal Layer Segmentation of Macular Optical Coherence Tomography Images Using Optimal 3-D Graph Search. - Mona Kathryn Garvin; Michael D. Abràmoff; Randy Kardon; Stephen R. Russell; Xiaodong Wu 001; Milan Sonka (IEEE Trans. Medical Imaging, 2008)

Electric Field Theory Motivated Graph Construction for Optimal Medical Image Segmentation. - Yin Yin; Qi Song 001; Milan Sonka (GbRPR, 2009)

Optimal multiple surfaces searching for video/image resizing - a graph-theoretic approach. - Dongfeng Han; Xiaodong Wu 001; Milan Sonka (ICCV, 2009)

Optimal Graph Search Segmentation Using Arc-Weighted Graph for Simultaneous Surface Detection of Bladder and Prostate. - Qi Song 001; Xiaodong Wu 001; Yunlong Liu; Mark Smith 005; John M. Buatti; Milan Sonka (MICCAI (1), 2009)

Optimal graph search based image segmentation for objects with complex topologies. - Xiaomin Liu; Danny Z. Chen; Xiaodong Wu 001; Milan Sonka (Image Processing, 2009)

Registration of 3D spectral OCT volumes using 3D SIFT feature point matching. - Meindert Niemeijer; Mona Kathryn Garvin; Kyungmoo Lee; Bram van Ginneken; Michael D. Abràmoff; Milan Sonka (Image Processing, 2009)

A novel multiscale topo-morphometric approach for separating arteries and veins via pulmonary CT imaging. - Punam K. Saha; Zhiyun Gao; Sara K. Alford; Milan Sonka; Eric A. Hoffman (Image Processing, 2009)

Globally optimal 3D graph search incorporating both edge and regional information: application to aortic MR image segmentation. - Qi Song 001; Xiaodong Wu 001; Xin Dou; Milan Sonka (Image Processing, 2009)

Recent improvements in tensor scale computation and its applications to medical imaging. - Ziyue Xu 001; Milan Sonka; Punam K. Saha (Image Processing, 2009)

Simultaneous segmentation of the bone and cartilage surfaces of a knee joint in 3D. - Y. Yin; X. Zhang; Donald D. Anderson; T. D. Brown; C. Van Hofwegen; Milan Sonka (Image Processing, 2009)

Segmentation of Pulmonary Vascular Trees from Thoracic 3D CT Images. - Hidenori Shikata; Geoffrey McLennan; Eric A. Hoffman; Milan Sonka (Int. J. Biomed. Imaging, 2009)

Congenital aortic disease: 4D magnetic resonance segmentation and quantitative analysis. - Fei Zhao; Honghai Zhang; Andreas Wahle; Matthew T. Thomas; Alan Stolpen; Thomas D. Scholz; Milan Sonka (Medical Image Anal., 2009)

Automated 3-D Intraretinal Layer Segmentation of Macular Spectral-Domain Optical Coherence Tomography Images. - Mona Kathryn Garvin; Michael D. Abràmoff; Xiaodong Wu 001; Stephen R. Russell; Trudy L. Burns; Milan Sonka (IEEE Trans. Medical Imaging, 2009)

Editorial. - Milan Sonka (IEEE Trans. Medical Imaging, 2009)

Simultaneous searching of globally optimal interacting surfaces with shape priors. - Qi Song 001; Xiaodong Wu 001; Yunlong Liu; Milan Sonka; Mona Kathryn Garvin (CVPR, 2010)

Shape and motion analysis of left ventricle dyssynchrony from real-time 3D echocardiography. - Honghai Zhang; Ademola K. Abiose; Dwayne N. Campbelz; Milan Sonka; James B. Martins; Andreas Wahle (ISBI, 2010)

Multi-scale Topo-morphometric Opening of Arteries and Veins: An Evaluative Study via Pulmonary CT Imaging. - Zhiyun Gao; Colin Holtze; Randall Grout; Milan Sonka; Eric A. Hoffman; Punam K. Saha (ISVC (3), 2010)

Motion Artifact Reduction in 4D Helical CT: Graph-Based Structure Alignment. - Dongfeng Han; John E. Bayouth; Sudershan Bhatia; Milan Sonka; Xiaodong Wu 001 (MCV, 2010)

Graph Search with Appearance and Shape Information for 3-D Prostate and Bladder Segmentation. - Qi Song 001; Yinxiao Liu; Yunlong Liu; Punam K. Saha; Milan Sonka; Xiaodong Wu 001 (MICCAI (3), 2010)

Multiscale topo-morphologic opening of arteries and veins: a validation study on phantoms and CT imaging of pulmonary vessel casting of pigs. - Zhiyun Gao; Colin Holtze; Milan Sonka; Eric A. Hoffman; Punam K. Saha (Image Processing, 2010)

A new osteophyte segmentation method with applications to an anterior cruciate ligament transection rabbit femur model via micro-CT imaging. - Guoyuan Liang; Jacob M. Elkins; Alexandre Coimbra; Le Thi Duong; Donald S. Williams; Milan Sonka; Punam K. Saha (Image Processing, 2010)

Electric field theory based approach to search-direction line definition in image segmentation: application to optimal femur-tibia cartilage segmentation in knee-joint 3-D MR. - Yin Yin; Milan Sonka (Image Processing, 2010)

Three-dimensional thrombus segmentation in abdominal aortic aneurysms using graph search based on a triangular mesh. - Kyungmoo Lee; Ryan K. Johnson; Yin Yin; Andreas Wahle; Mark E. Olszewski; Thomas D. Scholz; Milan Sonka (Comput. Biol. Medicine, 2010)

Segmentation of the Optic Disc in 3-D OCT Scans of the Optic Nerve Head. - Kyungmoo Lee; Meindert Niemeijer; Mona Kathryn Garvin; Young H. Kwon; Milan Sonka; Michael D. Abràmoff (IEEE Trans. Medical Imaging, 2010)

Three-Dimensional Analysis of Retinal Layer Texture: Identification of Fluid-Filled Regions in SD-OCT of the Macula. - Gwenolé Quellec; Kyungmoo Lee; Martin Dolejsi; Mona Kathryn Garvin; Michael D. Abràmoff; Milan Sonka (IEEE Trans. Medical Imaging, 2010)

Topomorphologic Separation of Fused Isointensity Objects via Multiscale Opening: Separating Arteries and Veins in 3-D Pulmonary CT. - Punam K. Saha; Zhiyun Gao; Sara K. Alford; Milan Sonka; Eric A. Hoffman (IEEE Trans. Medical Imaging, 2010)

LOGISMOS - Layered Optimal Graph Image Segmentation of Multiple Objects and Surfaces: Cartilage Segmentation in the Knee Joint. - Yin Yin; Xiangmin Zhang; Rachel Williams; Xiaodong Wu 001; Donald D. Anderson; Milan Sonka (IEEE Trans. Medical Imaging, 2010)

4-D Cardiac MR Image Analysis: Left and Right Ventricular Morphology and Function. - Honghai Zhang; Andreas Wahle; Ryan K. Johnson; Thomas D. Scholz; Milan Sonka (IEEE Trans. Medical Imaging, 2010)

Optimal multiple-seams search for image resizing with smoothness and shape prior. - Dongfeng Han; Milan Sonka; John E. Bayouth; Xiaodong Wu 001 (Vis. Comput., 2010)

Feature guided motion artifact reduction with structure-awareness in 4D CT images. - Dongfeng Han; John E. Bayouth; Qi Song 001; Sudershan Bhatia; Milan Sonka; Xiaodong Wu 001 (CVPR, 2011)

IVUS-based assessment of 3D morphology and virtual histology: Prediction of atherosclerotic plaque status and changes. - Milan Sonka; Richard W. Downe; Justin W. Garvin; John J. Lopez; Tomas Kovarnik; Andreas Wahle (EMBC, 2011)

Signal processing in medical imaging and image-guided intervention. - Milan Sonka (ICASSP, 2011)

Globally Optimal Tumor Segmentation in PET-CT Images: A Graph-Based Co-segmentation Method. - Dongfeng Han; John E. Bayouth; Qi Song 001; Aakant Taurani; Milan Sonka; John M. Buatti; Xiaodong Wu 001 (IPMI, 2011)

Surface-Region Context in Optimal Multi-object Graph-Based Segmentation: Robust Delineation of Pulmonary Tumors. - Qi Song 001; Mingqing Chen; Junjie Bai; Milan Sonka; Xiaodong Wu 001 (IPMI, 2011)

Efficient Algorithms for Segmenting Globally Optimal and Smooth Multi-surfaces. - Lei Xu 006; Branislav Stojkovic; Yongding Zhu; Qi Song 001; Xiaodong Wu 001; Milan Sonka; Jinhui Xu 001 (IPMI, 2011)

Maximum Weight Digital Regions Decomposable into Digital Star-Shaped Regions. - Matt Gibson 001; Dongfeng Han; Milan Sonka; Xiaodong Wu 001 (ISAAC, 2011)

Segmentation of pathological and diseased lung tissue in CT images using a graph-search algorithm. - Panfang Hua; Qi Song 001; Milan Sonka; Eric A. Hoffman; Joseph M. Reinhardt (ISBI, 2011)

Faster Segmentation Algorithm for Optical Coherence Tomography Images with Guaranteed Smoothness. - Lei Xu 006; Branislav Stojkovic; Hu Ding; Qi Song 001; Xiaodong Wu 001; Milan Sonka; Jinhui Xu 001 (MLMI, 2011)

Improved tensor scale computation with application to medical image interpolation. - Ziyue Xu 001; Milan Sonka; Punam K. Saha (Comput. Medical Imaging Graph., 2011)

A New Osteophyte Segmentation Algorithm Using the Partial Shape Model and Its Applications to Rabbit Femur Anterior Cruciate Ligament Transection via Micro-CT Imaging. - Punam K. Saha; Guoyuan Liang; Jacob M. Elkins; Alexandre Coimbra; Le Thi Duong; Donald S. Williams; Milan Sonka (IEEE Trans. Biomed. Eng., 2011)

Region Detection by Minimizing Intraclass Variance With Geometric Constraints, Global Optimality, and Efficient Approximation. - Xiaodong Wu 001; Xin Dou; Andreas Wahle; Milan Sonka (IEEE Trans. Medical Imaging, 2011)

Vessel Boundary Delineation on Fundus Images Using Graph-Based Approach. - Xiayu Xu; Meindert Niemeijer; Qi Song 001; Milan Sonka; Mona Kathryn Garvin; Joseph M. Reinhardt; Michael D. Abràmoff (IEEE Trans. Medical Imaging, 2011)

Efficient searching of globally optimal and smooth multisurfaces with shape priors. - Lei Xu 006; Branislav Stojkovic; Hu Ding; Qi Song 001; Xiaodong Wu 001; Milan Sonka; Jinhui Xu 001 (Image Processing, 2012)

Incorporation of texture-based features in optimal graph-theoretic approach with application to the 3D segmentation of intraretinal surfaces in SD-OCT volumes. - Bhavna Josephine Antony; Michael D. Abràmoff; Milan Sonka; Young H. Kwon; Mona Kathryn Garvin (Image Processing, 2012)

Parallel graph search: application to intraretinal layer segmentation of 3-D macular OCT scans. - Kyungmoo Lee; Michael D. Abràmoff; Mona Kathryn Garvin; Milan Sonka (Image Processing, 2012)

Registration of 3D spectral OCT volumes combining ICP with a graph-based approach. - Meindert Niemeijer; Kyungmoo Lee; Mona Kathryn Garvin; Michael D. Abràmoff; Milan Sonka (Image Processing, 2012)

Three-Dimensional Segmentation of Fluid-Associated Abnormalities in Retinal OCT: Probability Constrained Graph-Search-Graph-Cut. - Xinjian Chen 001; Meindert Niemeijer; Li Zhang 031; Kyungmoo Lee; Michael D. Abràmoff; Milan Sonka (IEEE Trans. Medical Imaging, 2012)

Vessel segmentation in images of optical coherence tomography using shadow information and thickening of Retinal Nerve Fiber Layer. - Rahele Kafieh; Hajar Danesh; Hossein Rabbani; Michael Abramoff; Milan Sonka (ICASSP, 2013)

Intra-retinal layer segmentation of optical coherence tomography using diffusion map. - Rahele Kafieh; Hossein Rabbani; Michael Abramoff; Milan Sonka (ICASSP, 2013)

Automated analysis of cartilage morphology. - Satyananda Kashyap; Yin Yin; Milan Sonka (ISBI, 2013)

Graph-based 4D lung segmentation in CT images with expert-guided computer-aided refinement. - Shanhui Sun; Milan Sonka; Reinhard Beichel (ISBI, 2013)

Lung segmentation refinement based on optimal surface finding utilizing a hybrid desktop/virtual reality user interface. - Shanhui Sun; Milan Sonka; Reinhard Beichel (Comput. Medical Imaging Graph., 2013)

Thickness Mapping of Eleven Retinal Layers in Normal Eyes Using Spectral Domain Optical Coherence Tomography. - Rahele Kafieh; Hossein Rabbani; Fedra Hajizadeh; Michael D. Abràmoff; Milan Sonka (CoRR, 2013)

Optical Coherence Tomography Noise Reduction Using Anisotropic Local Bivariate Gaussian Mixture Prior in 3D Complex Wavelet Domain. - Hossein Rabbani; Milan Sonka; Michael D. Abràmoff (Int. J. Biomed. Imaging, 2013)

Intra-retinal layer segmentation of 3D optical coherence tomography using coarse grained diffusion map. - Rahele Kafieh; Hossein Rabbani; Michael D. Abràmoff; Milan Sonka (Medical Image Anal., 2013)

Optimal Graph Search Based Segmentation of Airway Tree Double Surfaces Across Bifurcations. - Xiaomin Liu; Danny Z. Chen; Merryn H. Tawhai; Xiaodong Wu 001; Eric A. Hoffman; Milan Sonka (IEEE Trans. Medical Imaging, 2013)

Optimal Multiple Surface Segmentation With Shape and Context Priors. - Qi Song 001; Junjie Bai; Mona Kathryn Garvin; Milan Sonka; John M. Buatti; Xiaodong Wu 001 (IEEE Trans. Medical Imaging, 2013)

Graph-Based IVUS Segmentation With Efficient Computer-Aided Refinement. - Shanhui Sun; Milan Sonka; Reinhard Beichel (IEEE Trans. Medical Imaging, 2013)

Automated surface segmentation of internal limiting membrane in spectral-domain optical coherence tomography volumes with a deep cup using a 3-D range expansion approach. - Abhay Shah; Jui-Kai Wang; Mona Kathryn Garvin; Milan Sonka; Xiaodong Wu 001 (ISBI, 2014)

Robust Cortical Thickness Measurement with LOGISMOS-B. - Ipek Oguz; Milan Sonka (MICCAI (1), 2014)

Multi-Surface and Multi-Field Co-Segmentation of 3-D Retinal Optical Coherence Tomography. - Hrvoje Bogunovic; Milan Sonka; Young H. Kwon; Pavlina Kemp; Michael D. Abràmoff; Xiaodong Wu 001 (IEEE Trans. Medical Imaging, 2014)

LOGISMOS-B: Layered Optimal Graph Image Segmentation of Multiple Objects and Surfaces for the Brain. - Ipek Oguz; Milan Sonka (IEEE Trans. Medical Imaging, 2014)

Prospective Prediction of Thin-Cap Fibroatheromas from Baseline Virtual Histology Intravascular Ultrasound Data. - Ling Zhang 002; Andreas Wahle; Zhi Chen 025; John J. Lopez; Tomas Kovarnik; Milan Sonka (MICCAI (2), 2015)

Improved segmentation of abnormal cervical nuclei using a graph-search based approach. - Ling Zhang 002; Shaoxiong Liu; Tianfu Wang 001; Siping Chen; Milan Sonka (Digital Pathology, 2015)

Fast and memory-efficient LOGISMOS graph search for intraretinal layer segmentation of 3D macular OCT scans. - Kyungmoo Lee; Li Zhang 031; Michael D. Abràmoff; Milan Sonka (Image Processing, 2015)

LOGISMOS-B for primates: primate cortical surface reconstruction and thickness measurement. - Ipek Oguz; Martin Styner; Mar Sanchez; Yundi Shi; Milan Sonka (Image Processing, 2015)

Joint registration of location and orientation of intravascular ultrasound pullbacks using a 3D graph based method. - Ling Zhang 002; Andreas Wahle; Zhi Chen 025; Li Zhang 047; Richard W. Downe; Tomas Kovarnik; Milan Sonka (Image Processing, 2015)

Automated 3-D Retinal Layer Segmentation of Macular Optical Coherence Tomography Images With Serous Pigment Epithelial Detachments. - Fei Shi; Xinjian Chen 001; Heming Zhao; Weifang Zhu; Dehui Xiang; Enting Gao; Milan Sonka; Haoyu Chen 002 (IEEE Trans. Medical Imaging, 2015)

Stratified Sampling Voxel Classification for Segmentation of Intraretinal and Subretinal Fluid in Longitudinal Clinical OCT Data. - Xiayu Xu; Kyungmoo Lee; Li Zhang 031; Milan Sonka; Michael D. Abràmoff (IEEE Trans. Medical Imaging, 2015)

Simultaneous Registration of Location and Orientation in Intravascular Ultrasound Pullbacks Pairs Via 3D Graph-Based Optimization. - Ling Zhang 002; Andreas Wahle; Zhi Chen 025; Li Zhang 047; Richard W. Downe; Tomas Kovarnik; Milan Sonka (IEEE Trans. Medical Imaging, 2015)

Hedgehog Shape Priors for Multi-Object Segmentation. - Hossam N. Isack; Olga Veksler; Milan Sonka; Yuri Boykov (CVPR, 2016)

Statistical shape analysis of automatically segmented femur bones: Data from the osteoarthritis initiative. - Satyananda Kashyap; Ipek Oguz; Milan Sonka (ISBI, 2016)

Location-specific prediction of vulnerable plaque using IVUS, virtual histology, and spatial context. - Ling Zhang 002; Andreas Wahle; Zhi Chen 025; John J. Lopez; Tomas Kovarnik; Milan Sonka (ISBI, 2016)

Comprehensive serial study of dynamic remodeling of atherosclerotic coronary arteries using IVUS. - Zhi Chen 025; Andreas Wahle; Ling Zhang 002; Tomas Kovarnik; John J. Lopez; Milan Sonka (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2016)

Comparative study of multimodal intra-subject image registration methods on a publicly available database. - Mohammad Saleh Miri; Ali Ghayoor; Hans J. Johnson; Milan Sonka (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2016)

Automated Segmentation of Knee MRI Using Hierarchical Classifiers and Just Enough Interaction Based Learning: Data from Osteoarthritis Initiative. - Satyananda Kashyap; Ipek Oguz; Honghai Zhang; Milan Sonka (MICCAI (2), 2016)

Globally Optimal Label Fusion with Shape Priors. - Ipek Oguz; Satyananda Kashyap; Hongzhi Wang 002; Paul A. Yushkevich; Milan Sonka (MICCAI (2), 2016)

Optimal retinal cyst segmentation from OCT images. - Ipek Oguz; Li Zhang 031; Michael D. Abràmoff; Milan Sonka (Image Processing, 2016)

Quantitative analysis of retinal OCT. - Milan Sonka; Michael D. Abràmoff (Medical Image Anal., 2016)

Efficient Optimization for Hierarchically-Structured Interacting Segments (HINTS). - Hossam N. Isack; Olga Veksler; Ipek Oguz; Milan Sonka; Yuri Boykov (CVPR, 2017)

Development of a radiobiological evaluation tool to assess the expected clinical impacts of contouring accuracy between manual and semi-automated segmentation algorithms. - Yusung Kim 003; Kaustubh Anil Patwardhan; Reinhard R. Beichel; Brian J. Smith; Christopher Mart; Kristin A. Plichta; Tangel Chang; Milan Sonka; Michael M. Graham; Vince Magnotta; Thomas L. Casavant; Junyi Xia; et al. (EMBC, 2017)

Combining fully convolutional networks and graph-based approach for automated segmentation of cervical cell nuclei. - Ling Zhang 002; Milan Sonka; Le Lu 001; Ronald M. Summers; Jianhua Yao 001 (ISBI, 2017)

Machine learning in a graph framework for subcortical segmentation. - Zhihui Guo; Satyananda Kashyap; Milan Sonka; Ipek Oguz (Image Processing, 2017)

Graph-based segmentation of abnormal nuclei in cervical cytology. - Ling Zhang 002; Hui Kong 001; Shaoxiong Liu; Tianfu Wang 001; Siping Chen; Milan Sonka (Comput. Medical Imaging Graph., 2017)

A machine-learning graph-based approach for 3D segmentation of Bruch's membrane opening from glaucomatous SD-OCT volumes. - Mohammad Saleh Miri; Michael D. Abràmoff; Young H. Kwon; Milan Sonka; Mona Kathryn Garvin (Medical Image Anal., 2017)

CorteXpert: A model-based method for automatic renal cortex segmentation. - Dehui Xiang; Ulas Bagci; Chao Jin; Fei Shi; Weifang Zhu; Jianhua Yao 001; Milan Sonka; Xinjian Chen 001 (Medical Image Anal., 2017)

Deep LOGISMOS: Deep learning graph-based 3D segmentation of pancreatic tumors on CT scans. - Zhihui Quo; Ling Zhang 002; Le Lu 001; Mohammadhadi Bagheri; Ronald M. Summers; Milan Sonka; Jianhua Yao 001 (ISBI, 2018)

Deep LOGISMOS: Deep Learning Graph-based 3D Segmentation of Pancreatic Tumors on CT scans. - Zhihui Guo; Ling Zhang 002; Le Lu 001; Mohammadhadi Bagheri; Ronald M. Summers; Milan Sonka; Jianhua Yao 001 (CoRR, 2018)

Quantitative 3D Analysis of Coronary Wall Morphology in Heart Transplant Patients: OCT-Assessed Cardiac Allograft Vasculopathy Progression. - Zhi Chen 025; Michal Pazdernik; Honghai Zhang; Andreas Wahle; Zhihui Guo; Helena Bedanova; Josef Kautzner; Vojtech Melenovsky; Tomas Kovarnik; Milan Sonka (Medical Image Anal., 2018)

Learning-Based Cost Functions for 3-D and 4-D Multi-Surface Multi-Object Segmentation of Knee MRI: Data From the Osteoarthritis Initiative. - Satyananda Kashyap; Honghai Zhang; Karan Rao; Milan Sonka (IEEE Trans. Medical Imaging, 2018)

Predicting Locations of High-Risk Plaques in Coronary Arteries in Patients Receiving Statin Therapy. - Ling Zhang 002; Andreas Wahle; Zhi Chen 025; John J. Lopez; Tomas Kovarnik; Milan Sonka (IEEE Trans. Medical Imaging, 2018)

DeepCenterline: A Multi-task Fully Convolutional Network for Centerline Extraction. - Zhihui Guo; Junjie Bai; Yi Lu 019; Xin Wang 045; Kunlin Cao; Qi Song 001; Milan Sonka; Youbing Yin (IPMI, 2019)

Learning-Based Cost Functions for 3D and 4D Multi-Surface Multi-Object Segmentation of Knee MRI: Data from the Osteoarthritis Initiative. - Satyananda Kashyap; Honghai Zhang; Karan Rao; Milan Sonka (CoRR, 2019)

Just-Enough Interaction Approach to Knee MRI Segmentation: Data from the Osteoarthritis Initiative. - Satyananda Kashyap; Honghai Zhang; Milan Sonka (CoRR, 2019)

Multiresolution LOGISMOS graph search for automated choroidal layer segmentation of 3D macular OCT scans. - Kyungmoo Lee; Elliott H. Sohn; Honghai Zhang; Alexis K. Warren; Andreas Wahle; S. Scott Whitmore; Milan Sonka; Michael D. Abràmoff (Image Processing, 2020)

FilterNet: A Neighborhood Relationship Enhanced Fully Convolutional Network for Calf Muscle Compartment Segmentation. - Zhihui Guo; Honghai Zhang; Zhi Chen 025; Ellen van der Plas; Laurie Gutmann; Daniel Thedens; Peggy Nopoulos; Milan Sonka (CoRR, 2020)

COVID TV-UNet: Segmenting COVID-19 Chest CT Images Using Connectivity Imposed U-Net. - Narges Saeedizadeh; Shervin Minaee; Rahele Kafieh; Shakib Yazdani; Milan Sonka (CoRR, 2020)

COVID CT-Net: Predicting Covid-19 From Chest CT Images Using Attentional Convolutional Network. - Shakib Yazdani; Shervin Minaee; Rahele Kafieh; Narges Saeedizadeh; Milan Sonka (CoRR, 2020)

Robust Deep AUC Maximization: A New Surrogate Loss and Empirical Studies on Medical Image Classification. - Zhuoning Yuan; Yan Yan 006; Milan Sonka; Tianbao Yang (CoRR, 2020)

Deep-COVID: Predicting COVID-19 from chest X-ray images using deep transfer learning. - Shervin Minaee; Rahele Kafieh; Milan Sonka; Shakib Yazdani; Ghazaleh Jamalipour Soufi (Medical Image Anal., 2020)

Large-scale Robust Deep AUC Maximization: A New Surrogate Loss and Empirical Studies on Medical Image Classification. - Zhuoning Yuan; Yan Yan 006; Milan Sonka; Tianbao Yang (ICCV, 2021)

Fully automated 3D segmentation of MR-imaged calf muscle compartments: Neighborhood relationship enhanced fully convolutional network. - Zhihui Guo; Honghai Zhang; Zhi Chen 025; Ellen van der Plas; Laurie Gutmann; Daniel Thedens; Peggy Nopoulos; Milan Sonka (Comput. Medical Imaging Graph., 2021)

Semi-automated intracranial aneurysm segmentation and neck detection. - Nam H. Le; Edgar A. Samaniego; Ashrita Raghuram; Sebastián Sánchez; Honghai Zhang; Milan Sonka (Image Processing, 2022)

Visual attribution for deep learning segmentation in medical imaging. - Sean Mullan; Milan Sonka (Image Processing, 2022)

KCB-Net: A 3D knee cartilage and bone segmentation network via sparse annotation. - Yaopeng Peng; Hao Zheng 006; Peixian Liang; Lichun Zhang; Fahim A. Zaman; Xiaodong Wu 001; Milan Sonka; Danny Z. Chen (Medical Image Anal., 2022)

CMC-Net: 3D calf muscle compartment segmentation with sparse annotation. - Yaopeng Peng; Hao Zheng 006; Lichun Zhang; Milan Sonka; Danny Z. Chen (Medical Image Anal., 2022)

Trust, but Verify: Robust Image Segmentation using Deep Learning. - Fahim Ahmed Zaman; Xiaodong Wu 001; Weiyu Xu; Milan Sonka; Raghuraman Mudumbai (ACSSC, 2023)

Provable Multi-instance Deep AUC Maximization with Stochastic Pooling. - Dixian Zhu; Bokun Wang; Zhi Chen 025; Yaxing Wang; Milan Sonka; Xiaodong Wu 001; Tianbao Yang (ICML, 2023)

PHG-Net: Persistent Homology Guided Medical Image Classification. - Yaopeng Peng; Hongxiao Wang; Milan Sonka; Danny Z. Chen (CoRR, 2023)

Synthetic Nodules for Evaluation of 3D Deep Learning Segmentation Attribution. - Sean Mullan; Milan Sonka (Zenodo, 2023)

Segmentation quality assessment by automated detection of erroneous surface regions in medical images. - Fahim A. Zaman; Lichun Zhang; Honghai Zhang; Milan Sonka; Xiaodong Wu 001 (Comput. Biol. Medicine, 2023)

Sensitivity of CNN image analysis to multifaceted measurements of neurite growth. - Joseph T. Vecchi; Sean Mullan; Josue A. Lopez; Madeline Rhomberg; Annamarie Yamamoto; Annabelle Hallam; Amy Lee; Milan Sonka; Marlan R. Hansen (BMC Bioinform., 2023)

Surf-CDM: Score-Based Surface Cold-Diffusion Model for Medical Image Segmentation. - Fahim Ahmed Zaman; Mathews Jacob; Amanda Chang; Kan Liu 003; Milan Sonka; Xiaodong Wu 001 (ISBI, 2024)

Group Vision Transformer. - Yaopeng Peng; Milan Sonka; Danny Z. Chen (ACM Multimedia, 2024)

PHG-Net: Persistent Homology Guided Medical Image Classification*. - Yaopeng Peng; Hongxiao Wang; Milan Sonka; Danny Z. Chen (WACV, 2024)

Denoising Diffusions in Latent Space for Medical Image Segmentation. - Fahim Ahmed Zaman; Mathews Jacob; Amanda Chang; Kan Liu 003; Milan Sonka; Xiaodong Wu 001 (CoRR, 2024)

FiAt-Net: Detecting Fibroatheroma Plaque Cap in 3D Intravascular OCT Images. - Yaopeng Peng; Zhi Chen 025; Andreas Wahle; Tomas Kovarnik; Milan Sonka; Danny Z. Chen (CoRR, 2024)

U-Net V2: Rethinking the Skip Connections of U-Net for Medical Image Segmentation. - Yaopeng Peng; Danny Z. Chen; Milan Sonka (ISBI, 2025)

Spectral U-Net: Enhancing Medical Image Segmentation via Spectral Decomposition. - Yaopeng Peng; Danny Z. Chen; Milan Sonka (ISBI, 2025)

Sli2Vol+: Segmenting 3D Medical Images Based on an Object Estimation Guided Correspondence Flow Network. - Delin An; Pengfei Gu; Milan Sonka; Chaoli Wang 001; Danny Z. Chen (WACV, 2025)