Enhanced statistics for local alignment of multiple alignments improves prediction of protein function and structure. - Milana Frenkel-Morgenstern; Hillary Voet; Shmuel Pietrokovski (Bioinform., 2005)

One-Block CYRCA: an automated procedure for identifying multiple-block alignments from single block queries. - Milana Frenkel-Morgenstern; Alice Singer; Hagit Bronfeld; Shmuel Pietrokovski (Nucleic Acids Res., 2005)

Refining intra-protein contact prediction by graph analysis. - Milana Frenkel-Morgenstern; Rachel Magid; Eran Eyal; Shmuel Pietrokovski (BMC Bioinform., 2007)

Dynamic Proteomics: a database for dynamics and localizations of endogenous fluorescently-tagged proteins in living human cells. - Milana Frenkel-Morgenstern; Ariel A. Cohen; Naama Geva-Zatorsky; Eran Eden; Jaime Prilusky; Irina Issaeva; Alex Sigal; Cellina Cohen-Saidon; Yuvalal Liron; Lydia Cohen; Tamar Danon; Natalie Perzov; et al. (Nucleic Acids Res., 2010)

Novel domain combinations in proteins encoded by chimeric transcripts. - Milana Frenkel-Morgenstern; Alfonso Valencia (Bioinform., 2012)

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data. - Milana Frenkel-Morgenstern; Alessandro Gorohovski; Vincent Lacroix; Mark F. Rogers; Kristina Ibáñez; Cesar Boullosa; Eduardo Andrés León; Asa Ben-Hur; Alfonso Valencia (Nucleic Acids Res., 2013)

ChiTaRS 2.1 - an improved database of the chimeric transcripts and RNA-seq data with novel sense-antisense chimeric RNA transcripts. - Milana Frenkel-Morgenstern; Alessandro Gorohovski; Dunja Vucenovic; Lorena Maestre; Alfonso Valencia (Nucleic Acids Res., 2015)

ChiTaRS-3.1 - the enhanced chimeric transcripts and RNA-seq database matched with protein-protein interactions. - Alessandro Gorohovski; Somnath Tagore; Vikrant Palande; Assaf Malka; Dorith Raviv-Shay; Milana Frenkel-Morgenstern (Nucleic Acids Res., 2017)

Art in Science Competition invites artworks to the annual exhibition on ISMB 2018 in Chicago. - Milana Frenkel-Morgenstern; Lonnie R. Welch; Bruno A. Gaëta; Diane E. Kovats (PLoS Comput. Biol., 2018)

When Mathematics Outsmarts Cancer. - Somnath Tagore; Milana Frenkel-Morgenstern (IWBBIO (1), 2019)

ProtFus: A Comprehensive Method Characterizing Protein-Protein Interactions of Fusion Proteins. - Somnath Tagore; Alessandro Gorohovski; Lars Juhl Jensen; Milana Frenkel-Morgenstern (PLoS Comput. Biol., 2019)

SCOR: A secure international informatics infrastructure to investigate COVID-19. - Jean Louis Raisaro; Francesco Marino; Juan Ramón Troncoso-Pastoriza; Raphaelle Beau-Lejdstrom; Riccardo Bellazzi; Robert Murphy; Elmer V. Bernstam; Henry Wang; Mauro Bucalo; Yong Chen 016; Assaf Gottlieb; Arif Ozgun Harmanci; et al. (J. Am. Medical Informatics Assoc., 2020)

ChiTaRS 5.0: the comprehensive database of chimeric transcripts matched with druggable fusions and 3D chromatin maps. - Deepak Balamurali; Alessandro Gorohovski; Rajesh Detroja; Vikrant Palande; Dorith Raviv-Shay; Milana Frenkel-Morgenstern (Nucleic Acids Res., 2020)

Genomic basis for RNA alterations in cancer. - Claudia Calabrese; Natalie R. Davidson; Deniz Demircioglu; Nuno A. Fonseca; Yao He; André Kahles; Kjong-Van Lehmann; Fenglin Liu; Yuichi Shiraishi; Cameron M. Soulette; Lara Urban; Liliana Greger; et al. (Nat., 2020)

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. - Esther Rheinbay; Morten Muhlig Nielsen; Federico Abascal; Jeremiah Wala; Ofer Shapira; Grace Tiao; Henrik Hornshøj; Julian M. Hess; Randi Istrup Juul; Ziao Lin; Lars Feuerbach; Radhakrishnan Sabarinathan; et al. (Nat., 2020)

COVID19 Drug Repository: text-mining the literature in search of putative COVID19 therapeutics. - Dmitry Tworowski; Alessandro Gorohovski; Sumit Mukherjee; Gon Carmi; Eliad Levy; Rajesh Detroja; Sunanda Biswas Mukherjee; Milana Frenkel-Morgenstern (Nucleic Acids Res., 2021)