Molywood: streamlining the design and rendering of molecular movies. - Milosz Wieczór; Adam Hospital; Genís Bayarri; Jacek Czub; Modesto Orozco (Bioinform., 2020)

Molecular mechanism of proton-coupled ligand translocation by the bacterial efflux pump EmrE. - Jakub Jurasz; Maciej Baginski; Jacek Czub; Milosz Wieczór (PLoS Comput. Biol., 2021)

Molecular basis of Arginine and Lysine DNA sequence-dependent thermo-stability modulation. - Benjamin Martin; Pablo D. Dans; Milosz Wieczór; Núria Villegas; Isabelle Brun-Heath; Federica Battistini; Montserrat Terrazas; Modesto Orozco (PLoS Comput. Biol., 2022)

Character-level Tokenizations as Powerful Inductive Biases for RNA Foundational Models. - Adrián Morales-Pastor; Raquel Vázquez-Reza; Milosz Wieczór; Clàudia Valverde; Manel Gil-Sorribes; Bertran Miquel-Oliver; Álvaro Ciudad; Alexis Molina (CoRR, 2024)

Gromologist: A GROMACS-oriented utility library for structure and topology manipulation. - Milosz Wieczór; Jacek Czub; Modesto Orozco (SoftwareX, 2025)