A Simple Flexible Program for the Computational Analysis of Amyl Acyl Residue Distribution in Proteins: Application to the Distribution of Aromatic versus Aliphatic Hydrophobic Amino Acids in Transmembrane alpha-Helical Spanners of Integral Membrane Transport Proteins. - S. Tsang; Milton H. Saier Jr. (J. Comput. Biol., 1996)

The EcoCyc and MetaCyc databases. - Peter D. Karp; Monica Riley; Milton H. Saier Jr.; Ian T. Paulsen; Suzanne M. Paley; Alida Pellegrini-Toole (Nucleic Acids Res., 2000)

The EcoCyc Database. - Peter D. Karp; Monica Riley; Milton H. Saier Jr.; Ian T. Paulsen; Julio Collado-Vides; Suzanne M. Paley; Alida Pellegrini-Toole; César Bonavides-Martínez; Socorro Gama-Castro (Nucleic Acids Res., 2002)

TC-DB: An Architecture for Membrane Transport Protein Analysis. - Can V. Tran; Nelson M. Yang; Milton H. Saier Jr. (CSB, 2003)

TCDB: the Transporter Classification Database for membrane transport protein analyses and information. - Milton H. Saier Jr.; Can V. Tran; Ravi D. Barabote (Nucleic Acids Res., 2006)

Finding Transport Proteins in a General Protein Database. - Sanmay Das; Milton H. Saier Jr.; Charles Elkan (PKDD, 2007)

Learning to Find Relevant Biological Articles without Negative Training Examples. - Keith Noto; Milton H. Saier Jr.; Charles Elkan (Australasian Conference on Artificial Intelligence, 2008)

A stochastic automaton shows how enzyme assemblies may contribute to metabolic efficiency. - Patrick Amar; Guillaume Legent; Michel Thellier; Camille Ripoll; Gilles Bernot; Thomas Nyström; Milton H. Saier Jr.; Vic Norris (BMC Syst. Biol., 2008)

The Transporter Classification Database: recent advances. - Milton H. Saier Jr.; Ming Ren Yen; Keith Noto; Dorjee G. Tamang; Charles Elkan (Nucleic Acids Res., 2009)

Identifying Relevant Data for a Biological Database: Handcrafted Rules versus Machine Learning. - Aditya Kumar Sehgal; Sanmay Das; Keith Noto; Milton H. Saier Jr.; Charles Elkan (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Transformative research: definitions, approaches and consequences. - J. T. Trevors; Gerald H. Pollack; Milton H. Saier Jr.; Luke Masson (Theory Biosci., 2012)

The Transporter Classification Database. - Milton H. Saier Jr.; Vamsee S. Reddy; Dorjee G. Tamang; Åke Västermark (Nucleic Acids Res., 2014)

The complexity, challenges and benefits of comparing two transporter classification systems in TCDB and Pfam. - Zachary Chiang; Åke Västermark; Marco Punta; Penelope Coggill; Jaina Mistry; Robert D. Finn; Milton H. Saier Jr. (Briefings Bioinform., 2015)

Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat. - Patricia C. Babbitt; Pantelis G. Bagos; Amos Bairoch; Alex Bateman; Arnaud Chatonnet; Mark Jinan Chen; David J. Craik; Robert D. Finn; David E. Gloriam; Daniel H. Haft; Bernard Henrissat; Gemma L. Holliday; et al. (Database J. Biol. Databases Curation, 2015)

The Transporter Classification Database (TCDB): recent advances. - Milton H. Saier Jr.; Vamsee S. Reddy; Brian V. Tsu; Muhammad Saad Ahmed; Chun Li; Gabriel Moreno-Hagelsieb (Nucleic Acids Res., 2016)

The Transporter Classification Database (TCDB): 2021 update. - Milton H. Saier Jr.; Vamsee S. Reddy; Gabriel Moreno-Hagelsieb; Kevin J. Hendargo; Yichi Zhang; Vasu Iddamsetty; Katie Jing Kay Lam; Nuo Tian; Steven Russum; Jianing Wang; Arturo Medrano-Soto (Nucleic Acids Res., 2021)