Deformable trellises on factor graphs for robust microtubule tracking in clutter. - Rahul Kidambi; Min-Chi Shih; Kenneth Rose (ISBI, 2012)

Hidden Markov models for tracking neuronal structure contours in electron micrograph stacks. - Min-Chi Shih; Kenneth Rose (ISBI, 2012)

Scalable Tracing of Electron Micrographs by Fusing Top Down and Bottom Up Cues Using Hypergraph Diffusion. - Vignesh Jagadeesh; Min-Chi Shih; B. S. Manjunath; Kenneth Rose (MICCAI (3), 2012)

Hidden Markov model-based multi-modal image fusion with efficient training. - Renuka Shenoy; Min-Chi Shih; Kenneth Rose (ICIP, 2014)

Segmentation of cells in electron microscopy images through multimodal label transfer. - Renuka Shenoy; Min-Chi Shih; Kenneth Rose (ICIP, 2015)

A probabilistic framework for simultaneous segmentation and classification of multiple cells in multi-marker microscopy images. - Renuka Shenoy; Min-Chi Shih; Kenneth Rose (ISBI, 2015)

2D hidden Markov model with spatially adaptive state-space for tracing many cells in image sequence. - Min-Chi Shih; Renuka Shenoy; Kenneth Rose (ISBI, 2015)

Deformable Registration of Biomedical Images Using 2D Hidden Markov Models. - Renuka Shenoy; Min-Chi Shih; Kenneth Rose (IEEE Trans. Image Process., 2016)