Investigation and identification of protein γ-glutamyl carboxylation sites. - Tzong-Yi Lee; Cheng-Tsung Lu; Shu-An Chen; Neil Arvin Bretaña; Tzu-Hsiu Cheng; Min-Gang Su; Kai-Yao Huang (BMC Bioinform., 2011)

Incorporating substrate sequence motifs and spatial amino acid composition to identify kinase-specific phosphorylation sites on protein three-dimensional structures. - Min-Gang Su; Tzong-Yi Lee (BMC Bioinform., 2013)

dbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications. - Cheng-Tsung Lu; Kai-Yao Huang; Min-Gang Su; Tzong-Yi Lee; Neil Arvin Bretaña; Wen-Chi Chang; Yi-Ju Chen; Yu-Ju Chen; Hsien-Da Huang (Nucleic Acids Res., 2013)

RegPhos 2.0: an updated resource to explore protein kinase-substrate phosphorylation networks in mammals. - Kai-Yao Huang; Hsin-Yi Wu; Yi-Ju Chen; Cheng-Tsung Lu; Min-Gang Su; Yun-Chung Hsieh; Chih-Ming Tsai; Kuo-I Lin; Hsien-Da Huang; Tzong-Yi Lee; Yu-Ju Chen (Database J. Biol. Databases Curation, 2014)

topPTM: a new module of dbPTM for identifying functional post-translational modifications in transmembrane proteins. - Min-Gang Su; Kai-Yao Huang; Cheng-Tsung Lu; Hui-Ju Kao; Ya-Han Chang; Tzong-Yi Lee (Nucleic Acids Res., 2014)

dbSNO 2.0: a resource for exploring structural environment, functional and disease association and regulatory network of protein S-nitrosylation. - Yi-Ju Chen; Cheng-Tsung Lu; Min-Gang Su; Kai-Yao Huang; Wei-Chieh Ching; Hsiao-Hsiang Yang; Yen-Chen Liao; Yu-Ju Chen; Tzong-Yi Lee (Nucleic Acids Res., 2015)

UbiSite: incorporating two-layered machine learning method with substrate motifs to predict ubiquitin-conjugation site on lysines. - Chien-Hsun Huang; Min-Gang Su; Hui-Ju Kao; Jhih-Hua Jhong; Shun-Long Weng; Tzong-Yi Lee (BMC Syst. Biol., 2016)

dbPTM 2016: 10-year anniversary of a resource for post-translational modification of proteins. - Kai-Yao Huang; Min-Gang Su; Hui-Ju Kao; Yun-Chung Hsieh; Jhih-Hua Jhong; Kuang-Hao Cheng; Hsien-Da Huang; Tzong-Yi Lee (Nucleic Acids Res., 2016)

Investigation and identification of functional post-translational modification sites associated with drug binding and protein-protein interactions. - Min-Gang Su; Julia Tzu-Ya Weng; Justin Bo-Kai Hsu; Kai-Yao Huang; Yu-Hsiang Chi; Tzong-Yi Lee (BMC Syst. Biol., 2017)