An initial study of full parsing of clinical text using the Stanford Parser. - Hua Xu 001; Samir AbdelRahman; Min Jiang 007; Jungwei Fan 001; Yang Huang 008 (BIBM Workshops, 2011)

A study of machine-learning-based approaches to extract clinical entities and their assertions from discharge summaries. - Min Jiang 007; Yukun Chen 001; Mei Liu; S. Trent Rosenbloom; Subramani Mani; Joshua C. Denny; Hua Xu 001 (J. Am. Medical Informatics Assoc., 2011)

Facilitating pharmacogenetic studies using electronic health records and natural-language processing: a case study of warfarin. - Hua Xu 001; Min Jiang 007; Matthew Oetjens; Erica A. Bowton; Andrea H. Ramirez; Janina M. Jeff; Melissa A. Basford; Jill M. Pulley; James D. Cowan; Xiaoming Wang; Marylyn D. Ritchie; Daniel R. Masys; et al. (J. Am. Medical Informatics Assoc., 2011)

Extracting Semantic Lexicons from Discharge Summaries using Machine Learning and the C-Value Method. - Min Jiang 007; Joshua C. Denny; Buzhou Tang; Hongxin Cao; Hua Xu 001 (AMIA, 2012)

A Study of Transportability of an Existing Smoking Status Detection Module across Institutions. - Mei Liu; Anushi Shah; Min Jiang 007; Neeraja B. Peterson; Qi Dai; Melinda Aldrich; Qingxia Chen; Erica A. Bowton; Hongfang Liu; Joshua C. Denny; Hua Xu 001 (AMIA, 2012)

MedEx-UIMA - An Open-Source System for Medication Information Extraction from Clinical Text. - Anushi Shah; Min Jiang 007; Yonghui Wu; Joshua C. Denny; Hua Xu 001 (AMIA, 2012)

Clinical Entity Recognition Using Structural Support Vector Machines. - Buzhou Tang; Yonghui Wu; Min Jiang 007; Hua Xu 001 (AMIA, 2012)

Clinical entity recognition using structural support vector machines with rich features. - Buzhou Tang; Hongxin Cao; Yonghui Wu; Min Jiang 007; Hua Xu 001 (DTMBIO@CIKM, 2012)

Extracting epidemiologic exposure and outcome terms from literature using machine learning approaches. - Yanxin Lu; Hua Xu 001; Neeraja B. Peterson; Qi Dai; Min Jiang 007; Joshua C. Denny; Mei Liu (Int. J. Data Min. Bioinform., 2012)

Recognizing and Encoding Discorder Concepts in Clinical Text using Machine Learning and Vector Space Model. - Buzhou Tang; Yonghui Wu; Min Jiang 007; Joshua C. Denny; Hua Xu 001 (CLEF (Working Notes), 2013)

Clinical Acronym/Abbreviation Normalization using a Hybrid Approach. - Yonghui Wu; Buzhou Tang; Min Jiang 007; Sungrim Moon; Joshua C. Denny; Hua Xu 001 (CLEF (Working Notes), 2013)

Evaluation of Vector Space Models for Medical Disorders Information Retrieval. - Yaoyun Zhang; Trevor Cohen; Min Jiang 007; Buzhou Tang; Hua Xu 001 (CLEF (Working Notes), 2013)

Research and applications: Syntactic parsing of clinical text: guideline and corpus development with handling ill-formed sentences. - Jungwei Fan 001; Elly W. Yang; Min Jiang 007; Rashmi Prasad; Richard M. Loomis; Daniel Zisook; Joshua C. Denny; Hua Xu 001; Yang Huang 008 (J. Am. Medical Informatics Assoc., 2013)

A hybrid system for temporal information extraction from clinical text. - Buzhou Tang; Yonghui Wu; Min Jiang 007; Yukun Chen 001; Joshua C. Denny; Hua Xu 001 (J. Am. Medical Informatics Assoc., 2013)

Recognizing clinical entities in hospital discharge summaries using Structural Support Vector Machines with word representation features. - Buzhou Tang; Hongxin Cao; Yonghui Wu; Min Jiang 007; Hua Xu 001 (BMC Medical Informatics Decis. Mak., 2013)

Mining electronic health record data to detect drug-repurposing signals for cancers. - Hua Xu 001; Qingxia Chen; Jeremy L. Warner; Han Xue; Min Jiang 007; Anushi Shah; Melinda Aldrich; Qi Dai; Joshua C. Denny (AMIA, 2014)

Domain Adaptation for Semantic Role Labeling of Clinical Text. - Yaoyun Zhang; Buzhou Tang; Min Jiang 007; Jingqi Wang; Yonghui Wu; Hua Xu 001 (AMIA, 2014)

UTH_CCB: A report for SemEval 2014 - Task 7 Analysis of Clinical Text. - Yaoyun Zhang; Jingqi Wang; Buzhou Tang; Yonghui Wu; Min Jiang 007; Yukun Chen 001; Hua Xu 001 (SemEval@COLING, 2014)

Research and applications: A comprehensive study of named entity recognition in Chinese clinical text. - Jianbo Lei; Buzhou Tang; Xueqin Lu; Kaihua Gao; Min Jiang 007; Hua Xu 001 (J. Am. Medical Informatics Assoc., 2014)

Clinical Language Annotation, Modeling, and Processing Toolkit (CLAMP) - a user-centric NLP system. - Ergin Soysal; Jingqi Wang; Min Jiang 007; Yonghui Wu; Hua Xu 001 (AMIA, 2015)

A Study of Neural Word Embeddings for Named Entity Recognition in Clinical Text. - Yonghui Wu; Jun Xu 007; Min Jiang 007; Yaoyun Zhang; Hua Xu 001 (AMIA, 2015)

Named Entity Recognition in Chinese Clinical Text Using Deep Neural Network. - Yonghui Wu; Min Jiang 007; Jianbo Lei; Hua Xu 001 (MedInfo, 2015)

UTH-CCB: The Participation of the SemEval 2015 Challenge - Task 14. - Jun Xu 007; Yaoyun Zhang; Jingqi Wang; Yonghui Wu; Min Jiang 007; Ergin Soysal; Hua Xu 001 (SemEval@NAACL-HLT, 2015)

Validating drug repurposing signals using electronic health records: a case study of metformin associated with reduced cancer mortality. - Hua Xu 001; Melinda C. Aldrich; Qingxia Chen; Hongfang Liu; Neeraja B. Peterson; Qi Dai; Mia A. Levy; Anushi Shah; Han Xue; Xiaoyang Ruan; Min Jiang 007; Ying Li; et al. (J. Am. Medical Informatics Assoc., 2015)

Domain adaptation for semantic role labeling of clinical text. - Yaoyun Zhang; Buzhou Tang; Min Jiang 007; Jingqi Wang; Hua Xu 001 (J. Am. Medical Informatics Assoc., 2015)

A comparison of conditional random fields and structured support vector machines for chemical entity recognition in biomedical literature. - Buzhou Tang; Yudong Feng; Xiaolong Wang 001; Yonghui Wu; Yaoyun Zhang; Min Jiang 007; Jingqi Wang; Hua Xu 001 (J. Cheminformatics, 2015)

Parsing clinical text: how good are the state-of-the-art parsers? - Min Jiang 007; Yang Huang 008; Jungwei Fan 001; Buzhou Tang; Joshua C. Denny; Hua Xu 001 (BMC Medical Informatics Decis. Mak., 2015)

A Scalable Dataset Indexing Infrastructure for the bioCADDIE Data Discovery System. - Jeffrey S. Grethe; Ibrahim Burak Özyurt; Hua Xu 001; Xiaoling Chen; Ruiling Liu; Ergin Soysal; Anupama E. Gururaj; Hyeon-Eui Kim; Trevor Cohen; Todd R. Johnson; Mandana Salimi; Saeid Pournejati; et al. (AMIA, 2016)

Development of DataMed, a Data Discovery Index Prototype by bioCADDIE: Laying the Groundwork for Biomedical Data Discovery. - Hua Xu 001; Jeffrey S. Grethe; Xiaoling Chen; Ruiling Liu; Ergin Soysal; Anupama E. Gururaj; Yueling Li; Ibrahim Burak Özyurt; Hyeon-Eui Kim; Trevor Cohen; Todd R. Johnson; Mandana Salimi; et al. (AMIA, 2016)

Semantic Role Labeling of Clinical Text: Comparing Syntactic Parsers and Features. - Yaoyun Zhang; Min Jiang 007; Jingqi Wang; Hua Xu 001 (AMIA, 2016)

Clinical Named Entity Recognition Using Deep Learning Models. - Yonghui Wu; Min Jiang 007; Jun Xu 007; Degui Zhi; Hua Xu 001 (AMIA, 2017)

CLAMP - A User-Centric Clinical Natural Language Processing Toolkit. - Hua Xu 001; Ergin Soysal; Jingqi Wang; Min Jiang 007; Yonghui Wu (AMIA, 2017)

Towards practical temporal relation extraction from clinical notes: An analysis of direct temporal relations. - Hee-Jin Lee; Yaoyun Zhang; Jun Xu 007; Cui Tao; Hua Xu 001; Min Jiang 007 (BIBM, 2017)

A comparative study of different methods for automatic identification of clopidogrel-induced bleedings in electronic health records. - Hee-Jin Lee; Min Jiang 007; Yonghui Wu; Christian Shaffer; John H. Cleator; Eitan Friedman; Joshua P. Lewis; Dan M. Roden; Joshua C. Denny; Hua Xu 001 (CRI, 2017)

Parsing Clinical Text: How Good are the state-of-the-art Deep Learning Based Parsers? - Yaoyun Zhang; Firat Tiryaki; Min Jiang 007; Hua Xu 001 (ICHI Workshops, 2018)

DataMed - an open source discovery index for finding biomedical datasets. - Xiaoling Chen; Anupama E. Gururaj; Ibrahim Burak Özyurt; Ruiling Liu; Ergin Soysal; Trevor Cohen; Firat Tiryaki; Yueling Li; Nansu Zong; Min Jiang 007; Deevakar Rogith; Mandana Salimi; et al. (J. Am. Medical Informatics Assoc., 2018)

CLAMP - a toolkit for efficiently building customized clinical natural language processing pipelines. - Ergin Soysal; Jingqi Wang; Min Jiang 007; Yonghui Wu; Serguei Pakhomov; Hongfang Liu; Hua Xu 001 (J. Am. Medical Informatics Assoc., 2018)

Toward a normalized clinical drug knowledge base in China - applying the RxNorm model to Chinese clinical drugs. - Li Wang 077; Yaoyun Zhang; Min Jiang 007; Jingqi Wang; Jiancheng Dong; Yun Liu 020; Cui Tao; Guoqian Jiang; Yi Zhou 005; Hua Xu 001 (J. Am. Medical Informatics Assoc., 2018)

Identifying direct temporal relations between time and events from clinical notes. - Hee-Jin Lee; Yaoyun Zhang; Min Jiang 007; Jun Xu 007; Cui Tao; Hua Xu 001 (BMC Medical Informatics Decis. Mak., 2018)

Developing Customizable Cancer Information Extraction Modules for Pathology Reports Using CLAMP. - Ergin Soysal; Jeremy L. Warner; Jingqi Wang; Min Jiang 007; Krysten Harvey; Sandeep Kumar Jain; Xiao Dong; Hsing-yi Song; Harish Siddhanamatha; Liwei Wang 010; Qi Dai; Qingxia Chen; et al. (MedInfo, 2019)

Parsing clinical text using the state-of-the-art deep learning based parsers: a systematic comparison. - Yaoyun Zhang; Firat Tiryaki; Min Jiang 007; Hua Xu 001 (BMC Medical Informatics Decis. Mak., 2019)