Towards Enabling the Semantic Access of Phenotypic Information in Clinical Letters. - Shahad Kudama; Rafael Berlanga Llavori; Henry Houlden; Ernesto Jiménez-Ruiz; Hallgeir Jonvik; Adam Milward; Huw Morris; Mina Ryten; Jake Saklatvala; Michael Simpson; Nicholas W. Wood (SWAT4LS, 2015)

Recursive splicing in long vertebrate genes. - Christopher R. Sibley; Warren Emmett; Lorea Blazquez; Ana Faro; Nejc Haberman; Michael Briese; Daniah Trabzuni; Mina Ryten; Michael E. Weale; John Hardy; Miha Modic; Tomaz Curk; et al. (Nat., 2015)

An additional k-means clustering step improves the biological features of WGCNA gene co-expression networks. - Juan A. Botía; Jana Vandrovcova; Paola Forabosco; Sebastian Guelfi; Karishma D'Sa; John Hardy; Cathryn M. Lewis; Mina Ryten; Michael E. Weale (BMC Syst. Biol., 2017)

Modeling multifunctionality of genes with secondary gene co-expression networks in human brain provides novel disease insights. - Juan A. Sánchez; Ana Luisa Gil-Martínez; Alejandro Cisterna; Sonia García-Ruíz; Alicia Gómez-Pascual; Regina H. Reynolds; Mike A. Nalls; John Hardy; Mina Ryten; Juan A. Botía (Bioinform., 2021)

ggtranscript: an R package for the visualization and interpretation of transcript isoforms using ggplot2. - Emil K. Gustavsson; David Zhang; Regina H. Reynolds; Sonia García-Ruíz; Mina Ryten (Bioinform., 2022)

PhenoExam: gene set analyses through integration of different phenotype databases. - Alejandro Cisterna; Aurora González-Vidal; Daniel Ruiz; Jordi Ortiz; Alicia Gómez-Pascual; Zhongbo Chen; Mike A. Nalls; Faraz Faghri; John Hardy; Irene Díez; Paolo Maietta; Sara Álvarez; et al. (BMC Bioinform., 2022)

ensemblQueryR: fast, flexible and high-throughput querying of Ensembl LD API endpoints in R. - Aine Fairbrother-Browne; Sonia García-Ruíz; Regina H. Reynolds; Mina Ryten; Alan Hodgkinson (CoRR, 2023)

IntroVerse: a comprehensive database of introns across human tissues. - Sonia García-Ruíz; Emil K. Gustavsson; David Zhang; Regina H. Reynolds; Zhongbo Chen; Aine Fairbrother-Browne; Ana Luisa Gil-Martínez; Juan A. Botía; Leonardo Collado-Torres; Mina Ryten (Nucleic Acids Res., 2023)

ASAP CRN Cloud Release. - David Hafler; Le Zhang; Michael Lee; Jose Bras; Johan Jakobsson; Molly Gale Hammell; Clemens Scherzer; Xianjun Dong; Joshua Levin; John Hardy; Mina Ryten; Nicholas W. Wood (Zenodo, 2024)

PhenoLinker: Phenotype-gene link prediction and explanation using heterogeneous graph neural networks. - Jose L. Mellina Andreu; Luis Bernal; Antonio F. Skarmeta; Mina Ryten; Sara Álvarez; Alejandro Cisterna García; Juan A. Botía (Artif. Intell. Medicine, 2025)