Methods for assessing reproducibility of clustering patterns observed in analyses of microarray data. - Lisa M. McShane; Michael D. Radmacher; Boris Freidlin; Ren Yu; Ming-Chung Li; Richard M. Simon (Bioinform., 2002)

An adaptive method for cDNA microarray normalization. - Yingdong Zhao; Ming-Chung Li; Richard M. Simon (BMC Bioinform., 2005)

Non-negative matrix factorization of gene expression profiles: a plug-in for BRB-ArrayTools. - Qihao Qi; Yingdong Zhao; Ming-Chung Li; Richard M. Simon (Bioinform., 2009)

Using cross-validation to evaluate predictive accuracy of survival risk classifiers based on high-dimensional data. - Richard M. Simon; Jyothi Subramanian; Ming-Chung Li; Supriya Menezes (Briefings Bioinform., 2011)

OpenGeneMed: a portable, flexible and customizable informatics hub for the coordination of next-generation sequencing studies in support of precision medicine trials. - Alida Palmisano; Yingdong Zhao; Ming-Chung Li; Eric C. Polley; Richard M. Simon (Briefings Bioinform., 2017)

TPWshiny: an interactive R/Shiny app to explore cell line transcriptional responses to anti-cancer drugs. - Peter Zhang; Alida Palmisano; Ravindra Kumar; Ming-Chung Li; James H. Doroshow; Yingdong Zhao (Bioinform., 2022)