MethylCRF, an Algorithm for Estimating Absolute Methylation Levels at Single CpG Resolution from Methylation Enrichment and Restriction Enzyme Sequencing Methods. - Michael Stevens; Jeffrey B. Cheng; Mingchao Xie; Joseph F. Costello; Ting Wang (RECOMB, 2013)

MSIsensor: microsatellite instability detection using paired tumor-normal sequence data. - Beifang Niu; Kai Ye 001; Qunyuan Zhang; Charles Lu 002; Mingchao Xie; Michael D. McLellan; Michael C. Wendl; Li Ding (Bioinform., 2014)

MIRMMR: binary classification of microsatellite instability using methylation and mutations. - Steven M. Foltz; Wen-Wei Liang; Mingchao Xie; Li Ding (Bioinform., 2017)

A Deep Convolutional Neural Network Learning Transfer to SVM-Based Segmentation Method for Brain Tumor. - Bin Cui 005; Mingchao Xie; Chunxing Wang (ICAIT, 2019)