SILVER: an efficient tool for stable isotope labeling LC-MS data quantitative analysis with quality control methods. - Cheng Chang; Jiyang Zhang 001; Mingfei Han 001; Jie Ma; Wei Zhang; Songfeng Wu; Kehui Liu; Hongwei Xie; Fuchu He; Yunping Zhu (Bioinform., 2014)

PANDA: A comprehensive and flexible tool for quantitative proteomics data analysis. - Cheng Chang; Mansheng Li; Chaoping Guo; Yuqing Ding; Kaikun Xu; Mingfei Han 001; Fuchu He; Yunping Zhu (Bioinform., 2019)

KeggExp: a web server for visual integration of KEGG pathways and expression profile data. - Xian Liu; Mingfei Han 001; Chen Zhao; Cheng Chang; Yunping Zhu; Changhui Ge; Ronghua Yin; Yiqun Zhan; Changyan Li; Miao Yu; Fuchu He; Xiaoming Yang (Bioinform., 2019)

COMMO: a web server for the identification and analysis of consensus gene modules across multiple methods. - Xiaojing Wu; Mingfei Han 001; Xinyu Song 002; Song He; Xiaochen Bo; Yunping Zhu (Bioinform., 2023)

MulNet: a scalable framework for reconstructing intra- and intercellular signaling networks from bulk and single-cell RNA-seq data. - Mingfei Han 001; Xiaoqing Chen; Xiao Li; Jie Ma; Tao Chen 005; Chunyuan Yang; Juan Wang; Yingxing Li; Wenting Guo; Yunping Zhu (Briefings Bioinform., 2025)