GC3-biased gene domains in mammalian genomes. - Wenlong Shen; Dong Wang; Bingyu Ye; Minglei Shi; Lei Ma; Yan Zhang; Zhihu Zhao (Bioinform., 2015)

PhaSepDB: a database of liquid-liquid phase separation related proteins. - Kaiqiang You; Qi Huang; Chunyu Yu; Boyan Shen; Cristoffer Sevilla; Minglei Shi; Henning Hermjakob; Yang Chen 053; Tingting Li (Nucleic Acids Res., 2020)

Proteome-scale analysis of phase-separated proteins in immunofluorescence images. - Chunyu Yu; Boyan Shen; Kaiqiang You; Qi Huang; Minglei Shi; Congying Wu; Yang Chen; Chaolin Zhang; Tingting Li (Briefings Bioinform., 2021)

Computational Screening of Phase-separating Proteins. - Boyan Shen; Zhaoming Chen; Chunyu Yu; Taoyu Chen; Minglei Shi; Tingting Li (Genom. Proteom. Bioinform., 2021)

High-throughput experimental methods for investigating biomolecular condensates. - Taoyu Chen; Qi Lei; Minglei Shi; Tingting Li (Quant. Biol., 2021)

FlowTurbo: Towards Real-time Flow-Based Image Generation with Velocity Refiner. - Wenliang Zhao; Minglei Shi; Xumin Yu; Jie Zhou 001; Jiwen Lu (NeurIPS, 2024)

HemaScope: A Tool for Analyzing Single-cell and Spatial Transcriptomics Data of Hematopoietic Cells. - Zhenyi Wang; Yuxin Miao; Hongjun Li; Wenyan Cheng; Minglei Shi; Gang Lv; Yating Zhu; Junyi Zhang; Tingting Tan; Jin Gu; Michael Q. Zhang; Jianfeng Li; et al. (Genom. Proteom. Bioinform., 2025)

DiffMoE: Dynamic Token Selection for Scalable Diffusion Transformers. - Minglei Shi; Ziyang Yuan; Haotian Yang; Xintao Wang 002; Mingwu Zheng; Xin Tao 001; Wenliang Zhao; Wenzhao Zheng; Jie Zhou 001; Jiwen Lu; Pengfei Wan 001; Di Zhang; et al. (CoRR, 2025)