Enabling Data Analysis on High-Throughput Data in Large Data Depository Using Web-Based Analysis Platform - A Case Study on Integrating QUEST with GenePattern in Epigenetics Research. - Terry Camerlengo; Hatice Gulcin Ozer; Pearlly Yan; Jeffrey D. Parvin; Tim Hui-Ming Huang; Kun Huang 001; Mingxiang Teng; Lang Li 001; Yunlong Liu; Francisco Perez; Tahsin M. Kurç (BIBM, 2009)

miR2Disease: a manually curated database for microRNA deregulation in human disease. - Qinghua Jiang; Yadong Wang 001; Yangyang Hao; Liran Juan; Mingxiang Teng; Xinjun Zhang; Meimei Li; Guohua Wang; Yunlong Liu (Nucleic Acids Res., 2009)

Prioritization of disease microRNAs through a human phenome-microRNAome network. - Qinghua Jiang; Yangyang Hao; Guohua Wang; Liran Juan; Tianjiao Zhang; Mingxiang Teng; Yunlong Liu; Yadong Wang 001 (BMC Syst. Biol., 2010)

Empirical bayes model comparisons for differential methylation analysis. - Mingxiang Teng; Yadong Wang 001; Yunlong Liu; Seongho Kim; Curtis Balch; Kenneth P. Nephew; Lang Li 001 (GENSiPS, 2011)

A modulated empirical Bayes model for identifying topological and temporal estrogen receptor α regulatory networks in breast cancer. - Changyu Shen; Yi-Wen Huang; Yunlong Liu; Guohua Wang; Yuming Zhao; Zhiping Wang; Mingxiang Teng; Yadong Wang 001; David A. Flockhart; Todd C. Skaar; Pearlly Yan; Kenneth P. Nephew; et al. (BMC Syst. Biol., 2011)

regSNPs: a strategy for prioritizing regulatory single nucleotide substitutions. - Mingxiang Teng; Shoji Ichikawa; Leah R. Padgett; Yadong Wang 001; Matthew E. Mort; David N. Cooper; Daniel L. Koller; Tatiana Foroud; Howard J. Edenberg; Michael J. Econs; Yunlong Liu (Bioinform., 2012)

The personal genome browser: visualizing functions of genetic variants. - Liran Juan; Mingxiang Teng; Tianyi Zang; Yafeng Hao; Zhenxing Wang; Chengwu Yan; Yongzhuang Liu; Jie Li 055; Tianjiao Zhang; Yadong Wang 001 (Nucleic Acids Res., 2014)

Family genome browser: visualizing genomes with pedigree information. - Liran Juan; Yongzhuang Liu; Yongtian Wang; Mingxiang Teng; Tianyi Zang; Yadong Wang 001 (Bioinform., 2015)

DMcompress: Dynamic Markov models for bacterial genome compression. - Rongjie Wang; Mingxiang Teng; Yang Bai; Tianyi Zang; Yadong Wang 001 (BIBM, 2016)

rHAT: fast alignment of noisy long reads with regional hashing. - Bo Liu 023; Dengfeng Guan; Mingxiang Teng; Yadong Wang 001 (Bioinform., 2016)

Pre-SCNAClonal: Efficient GC bias correction for SCNA based tumor subclonal populations inferring. - Yan-Shuo Chu; Mingxiang Teng; Zhenxing Wang; Yongtian Wang; Yadong Wang 001 (BIBM, 2017)

Pysubsim-tree: A package for simulating tumor genomes according to tumor evolution history. - Yan-Shuo Chu; Ling Wang 005; Rongjie Wang; Mingxiang Teng; Yadong Wang 001 (BIBM, 2017)

WDNfinder: A method for minimum driver node set detection and analysis in directed and weighted biological network. - Yan-Shuo Chu; Zhenxing Wang; Rongjie Wang; Ningyi Zhang; Jie Li 055; Yang Hu 008; Mingxiang Teng; Yadong Wang 001 (J. Bioinform. Comput. Biol., 2017)

Modeling and correct the GC bias of tumor and normal WGS data for SCNA based tumor subclonal population inferring. - Yan-Shuo Chu; Mingxiang Teng; Yadong Wang 001 (BMC Bioinform., 2018)

Simulating genetically heterozygous genomes in the tumour tissue according to its clonal evolution history. - Yan-Shuo Chu; Mingxiang Teng; Yadong Wang 001 (Int. J. Comput. Biol. Drug Des., 2019)

TIMEx: tumor-immune microenvironment deconvolution web-portal for bulk transcriptomics using pan-cancer scRNA-seq signatures. - Mengyu Xie; Kyubum Lee; John H. Lockhart; Scott D. Cukras; Rodrigo Carvajal; Amer A. Beg; Elsa R. Flores; Mingxiang Teng; Christine H. Chung; Aik Choon Tan (Bioinform., 2021)

PATH-SURVEYOR: pathway level survival enquiry for immuno-oncology and drug repurposing. - Alyssa N. Obermayer; Darwin Chang; Gabrielle Nobles; Mingxiang Teng; Aik Choon Tan; Xuefeng Wang; Y. Ann Chen; Steven Eschrich; Paulo C. Rodriguez; G. Daniel Grass; Soheil Meshinchi; Ahmad Tarhini; et al. (BMC Bioinform., 2023)

An Epigenomic fingerprint of human cancers by landscape interrogation of super enhancers at the constituent level. - Xiang Liu; Nancy Gillis; Chang Jiang; Anthony McCofie; Timothy I. Shaw; Aik Choon Tan; Bo Zhao; Lixin Wan; Derek R. Duckett; Mingxiang Teng (PLoS Comput. Biol., 2024)