SubGE-DDI: A new prediction model for drug-drug interaction established through biomedical texts and drug-pairs knowledge subgraph enhancement. - Yiyang Shi; Mingxiu He; Junheng Chen; Fangfang Han; Yongming Cai (PLoS Comput. Biol., 2024)

A novel weighted pseudo-labeling framework based on matrix factorization for adverse drug reaction prediction. - Junheng Chen; Fangfang Han; Mingxiu He; Yiyang Shi; Yongming Cai (BMC Bioinform., 2025)