Parallel Computing in Semiclassical Dynamics Simulation of Photochemical Reactions. - Yusheng Dou; Mingze Bai; Hongjian Li; Hong Tang (NPC Workshops, 2008)

Performance of LAMMPS Code on Intel Quad-Core Xeon. - Mingze Bai; Yusheng Dou; Hong Tang; Shixin Sun (NPC, 2009)

Molecular Response to Ultrashort Laser Pulses. - Hong Tang; Yusheng Dou; Mingze Bai (Comput. Sci. Eng., 2009)

An SPMD-Like Algorithm for Parallelizing Molecular Dynamics Using OpenMP. - Mingze Bai; Shixin Sun; Hong Tang; Yusheng Dou; Glenn V. Lo (Comput. Sci. Eng., 2013)

A fast mode decision algorithm applied in medium-grain quality scalable video coding. - Dayong Wang; Yu Sun 003; Yuanyuan Huang 007; Mingze Bai; Hongjian Li (J. Vis. Commun. Image Represent., 2016)

Fast Intra prediction algorithm for quality scalable video coding. - Dayong Wang; Yu Sun 003; Mingze Bai; Hongjian Li; Chun Yuan; Yuanyuan Huang 007 (Signal Image Video Process., 2016)

BioContainers: an open-source and community-driven framework for software standardization. - Felipe da Veiga Leprevost; Björn A. Grüning; Saulo Aflitos; Hannes L. Röst; Julian Uszkoreit; Harald Barsnes; Marc Vaudel; Pablo A. Moreno; Laurent Gatto; Jonas Weber; Mingze Bai; Rafael C. Jiménez; et al. (Bioinform., 2017)

A pipeline for identifying endogenous neuropeptides from spectral archives. - Mingze Bai; Mingmin He; Qifeng Sun; Huadong Liao; Kunxian Shu; Henning Hermjakob (Int. J. Data Min. Bioinform., 2018)

iProX: an integrated proteome resource. - Jie Ma; Tao Chen 005; Songfeng Wu; Chunyuan Yang; Mingze Bai; Kunxian Shu; Kenli Li 001; Guoqing Zhang 006; Zhong Jin; Fuchu He; Henning Hermjakob; Yunping Zhu (Nucleic Acids Res., 2019)

Extraction of gene-disease association from literature using BioBERT. - Chuan Deng; Jiahui Zou; Jingwen Deng; Mingze Bai (CONF-CDS, 2021)

A comparative benchmarking and evaluation framework for heterogeneous network-based drug repositioning methods. - Yinghong Li 002; Yinqi Yang; Zhuohao Tong; Yu Wang; Qin Mi; Mingze Bai; Guizhao Liang; Bo Li 097; Kunxian Shu (Briefings Bioinform., 2024)

A graph neural network approach for accurate prediction of pathogenicity in multi-type variants. - Hongtao Yu; Guojing He; Wei Wang; Senbiao Qin; Yu Wang; Mingze Bai; Kunxian Shu; Dan Pu (Briefings Bioinform., 2024)

DTNPD: A comprehensive database of drugs and targets for neurological and psychiatric disorders. - Ding Luo; Zhuohao Tong; Lu Wen; Mingze Bai; Xiaojie Jin; Zerong Liu; Yinghong Li 002; Weiwei Xue (Comput. Biol. Medicine, 2024)

Efficient fine-tuning of small-parameter large language models for biomedical bilingual multi-task applications. - Yinghong Li; Yudong Yan; Zhuohao Tong; Yu Wang; Yinqi Yang; Mingze Bai; Dan Pu; Jiazheng Xie; Chuan Liu; Bo Li; Mingwei Liu; Kunxian Shu (Appl. Soft Comput., 2025)