Bridge-IF: Learning Inverse Protein Folding with Markov Bridges. - Yiheng Zhu; Jialu Wu; Qiuyi Li; Jiahuan Yan; Mingze Yin; Wei Wu; Mingyang Li; Jieping Ye; Zheng Wang; Jian Wu (NeurIPS, 2024)

Generative AI for Controllable Protein Sequence Design: A Survey. - Yiheng Zhu 002; Zitai Kong; Jialu Wu; Weize Liu; Yuqiang Han; Mingze Yin; Hongxia Xu; Chang-Yu Hsieh; Tingjun Hou (CoRR, 2024)

Group-On: Boosting One-Shot Segmentation with Supportive Query. - Hanjing Zhou; Mingze Yin; Jintai Chen; Danny Chen 001; Jian Wu 001 (CoRR, 2024)

Multi-Modal CLIP-Informed Protein Editing. - Mingze Yin; Hanjing Zhou; Yiheng Zhu 002; Miao Lin; Yixuan Wu; Jialu Wu; Hongxia Xu; Chang-Yu Hsieh; Tingjun Hou; Jintai Chen; Jian Wu 001 (CoRR, 2024)

Structure-Enhanced Protein Instruction Tuning: Towards General-Purpose Protein Understanding. - Wei Wu 045; Chao Wang 086; Liyi Chen 001; Mingze Yin; Yiheng Zhu 002; Kun Fu; Jieping Ye; Hui Xiong 001; Zheng Wang 027 (CoRR, 2024)

S2ALM: Sequence-Structure Pre-trained Large Language Model for Comprehensive Antibody Representation Learning. - Mingze Yin; Hanjing Zhou; Jialu Wu; Yiheng Zhu 002; Yuxuan Zhan; Zitai Kong; Hongxia Xu; Chang-Yu Hsieh; Jintai Chen; Tingjun Hou; Jian Wu 001 (CoRR, 2024)

Synergy of GFlowNet and Protein Language Model Makes a Diverse Antibody Designer. - Mingze Yin; Hanjing Zhou; Yiheng Zhu 002; Jialu Wu; Wei Wu 045; Mingyang Li; Kun Fu; Zheng Wang 027; Chang-Yu Hsieh; Tingjun Hou; Jian Wu 001 (AAAI, 2025)

ProtCLIP: Function-Informed Protein Multi-Modal Learning. - Hanjing Zhou; Mingze Yin; Wei Wu 045; Mingyang Li; Kun Fu; Jintai Chen; Jian Wu 001; Zheng Wang 027 (AAAI, 2025)

A Generalist Cross-Domain Molecular Learning Framework for Structure-Based Drug Discovery. - Yiheng Zhu; Mingyang Li; Junlong Liu; Kun Fu; Jiansheng Wu; Qiuyi Li; Mingze Yin; Jieping Ye; Jian Wu; Zheng Wang (CoRR, 2025)