Controlling Size When Aligning Multiple Genomic Sequences with Duplications. - Minmei Hou; Piotr Berman; Louxin Zhang; Webb Miller (WABI, 2006)

Approximating the spanning star forest problem and its applications to genomic sequence alignment. - C. Thach Nguyen; Jian Shen; Minmei Hou; Li Sheng 001; Webb Miller; Louxin Zhang (SODA, 2007)

HomologMiner: looking for homologous genomic groups in whole genomes. - Minmei Hou; Piotr Berman; Chih-Hao Hsu; Robert S. Harris (Bioinform., 2007)

Approximating the Spanning Star Forest Problem and Its Application to Genomic Sequence Alignment. - C. Thach Nguyen; Jian Shen; Minmei Hou; Li Sheng 001; Webb Miller; Louxin Zhang (SIAM J. Comput., 2008)

Aligning Two Genomic Sequences That Contain Duplications. - Minmei Hou; Cathy Riemer; Piotr Berman; Ross C. Hardison; Webb Miller (RECOMB-CG, 2009)

Pico-inplace-inversions between human and chimpanzee. - Minmei Hou; Ping Yao; Angela Antonou; Mitrick A. Johns (Bioinform., 2011)

Alignment seeding strategies using contiguous pyrimidine purine matches. - Minmei Hou; Louxin Zhang; Robert S. Harris (BCB, 2012)