Probe Design for Large-Scale Molecular Biology Applications. - Vincent Van Buren; Toshiyuki Yoshikawa; Toshio Hamatani; Minoru S. H. Ko (CSB, 2003)

A web-based tool for principal component and significance analysis of microarray data. - Alexei A. Sharov; Dawood B. Dudekula; Minoru S. H. Ko (Bioinform., 2005)

Chromatin Properties of Regulatory DNA Probed by Manipulation of Transcription Factors. - Alexei A. Sharov; Akira Nishiyama; Yong Qian; Dawood B. Dudekula; Dan L. Longo; David Schlessinger; Minoru S. H. Ko (J. Comput. Biol., 2014)

ExAtlas: An interactive online tool for meta-analysis of gene expression data. - Alexei A. Sharov; David Schlessinger; Minoru S. H. Ko (J. Bioinform. Comput. Biol., 2015)

SCODE: an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation. - Hirotaka Matsumoto; Hisanori Kiryu; Chikara Furusawa; Minoru S. H. Ko; Shigeru B. H. Ko; Norio Gouda; Tetsutaro Hayashi; Itoshi Nikaido (Bioinform., 2017)