UMI4Cats: an R package to analyze chromatin contact profiles obtained by UMI-4C. - Mireia Ramos-Rodríguez; Marc Subirana-Granés; Lorenzo Pasquali (Bioinform., 2021)

SPICEY: an R package for quantifying tissue specificity from single cell multi-omics data. - Georgina Fuentes-Páez; Nacho Molina; Mireia Ramos-Rodríguez; Lorenzo Pasquali (BMC Bioinform., 2026)