Finite-Difference Time-Domain Simulation for Three-Dimensional Polarized Light Imaging. - Miriam Menzel; Markus Axer; Hans De Raedt; Kristel Michielsen (BrainComp, 2015)

Understanding fiber mixture by simulation in 3D Polarized Light Imaging. - Melanie Dohmen; Miriam Menzel; Hendrik Wiese; Julia Reckfort; Frederike Hanke; Uwe Pietrzyk; Karl Zilles; Katrin Amunts; Markus Axer (NeuroImage, 2015)

Independent Component Analysis for Noise and Artifact Removal in Three-Dimensional Polarized Light Imaging. - Kai Benning; Miriam Menzel; Jan André Reuter; Markus Axer (BrainComp, 2019)

FAConstructor: an interactive tool for geometric modeling of nerve fiber architectures in the brain. - Jan André Reuter; Felix Matuschke; Miriam Menzel; Nicole Schubert; Kévin Ginsburger; Cyril Poupon; Katrin Amunts; Markus Axer (Int. J. Comput. Assist. Radiol. Surg., 2019)

SLIX: A Python package for fully automated evaluation of Scattered Light Imaging measurements on brain tissue. - Jan André Reuter; Miriam Menzel (J. Open Source Softw., 2020)

Scattered Light Imaging: Resolving the substructure of nerve fiber crossings in whole brain sections with micrometer resolution. - Miriam Menzel; Jan André Reuter; David Gräßel; Mike Huwer; Philipp Schlömer; Katrin Amunts; Markus Axer (NeuroImage, 2021)

GORDA: Graph-Based Orientation Distribution Analysis of SLI Scatterometry Patterns of Nerve Fibres. - Esteban Vaca; Miriam Menzel; Katrin Amunts; Markus Axer; Timo Dickscheid (ISBI, 2022)