An Alignment-Free Distance Measure for Closely Related Genomes. - Bernhard Haubold; Mirjana Domazet-Loso; Thomas Wiehe (RECOMB-CG, 2008)

Efficient estimation of pairwise distances between genomes. - Mirjana Domazet-Loso; Bernhard Haubold (Bioinform., 2009)

Estimating Mutation Distances from Unaligned Genomes. - Bernhard Haubold; Peter Pfaffelhuber; Mirjana Domazet-Loso; Thomas Wiehe (J. Comput. Biol., 2009)

Algorithms for Efficient Alignment-Free Sequence Comparison ; Algoritmi za učinkovitu usporedbu sekvenci bez korištenja sravnjivanja. - Mirjana Domazet-Loso (2010)

Alignment-free detection of local similarity among viral and bacterial genomes. - Mirjana Domazet-Loso; Bernhard Haubold (Bioinform., 2011)

Correspondence Analysis Applied to Large Scale Evo-Devo Data. - Tin Siroki; Sara Koska; Nina Corak; Momir Futo; Tomislav Domazet-Loso; Mirjana Domazet-Loso (MIPRO, 2019)