Compiling Functional Code for System-Level Environment. - Miroslav Kratochvíl (ITAT, 2016)

Sachem: a chemical cartridge for high-performance substructure search. - Miroslav Kratochvíl; Jirí Vondrásek; Jakub Galgonek (J. Cheminformatics, 2018)

Interoperable chemical structure search service. - Miroslav Kratochvíl; Jirí Vondrásek; Jakub Galgonek (J. Cheminformatics, 2019)

Detailed Analysis and Optimization of CUDA K-means Algorithm. - Martin Krulis; Miroslav Kratochvíl (ICPP, 2020)

SOMHunter for Lifelog Search. - Frantisek Mejzlík; Patrik Veselý; Miroslav Kratochvíl; Tomás Soucek; Jakub Lokoc (LSC@ICMR, 2020)

SOMHunter: Lightweight Video Search System with SOM-Guided Relevance Feedback. - Miroslav Kratochvíl; Frantisek Mejzlík; Patrik Veselý; Tomás Soucek; Jakub Lokoc (ACM Multimedia, 2020)

SOM-Hunter: Video Browsing with Relevance-to-SOM Feedback Loop. - Miroslav Kratochvíl; Patrik Veselý; Frantisek Mejzlík; Jakub Lokoc (MMM (2), 2020)

ShinySOM: graphical SOM-based analysis of single-cell cytometry data. - Miroslav Kratochvíl; David Bednárek; Tomás Sieger; Karel Fiser; Jirí Vondrásek (Bioinform., 2020)

Correction to: Interoperable chemical structure search service. - Miroslav Kratochvíl; Jirí Vondrásek; Jakub Galgonek (J. Cheminformatics, 2020)

GPU-Accelerated Mahalanobis-Average Hierarchical Clustering Analysis. - Adam Smelko; Miroslav Kratochvíl; Martin Krulis; Tomás Sieger (Euro-Par, 2021)

On the User-Centric Comparative Remote Evaluation of Interactive Video Search Systems. - Luca Rossetto; Ralph Gasser; Silvan Heller; Mahnaz Parian-Scherb; Loris Sauter; Florian Spiess 001; Heiko Schuldt; Ladislav Peska; Tomás Soucek; Miroslav Kratochvíl; Frantisek Mejzlík; Patrik Veselý; et al. (IEEE Multim., 2021)

Astute Approach to Handling Memory Layouts of Regular Data Structures. - Adam Smelko; Martin Krulis; Miroslav Kratochvíl; Jirí Klepl; Jirí Mayer; Petr Simunek (ICA3PP, 2022)

Translational Challenges of Biomedical Machine Learning Solutions in Clinical and Laboratory Settings. - Carlos Vega; Miroslav Kratochvíl; Venkata P. Satagopam; Reinhard Schneider 002 (IWBBIO (2), 2022)

COBREXA.jl: constraint-based reconstruction and exascale analysis. - Miroslav Kratochvíl; Laurent Heirendt; St. Elmo Wilken; Taneli Pusa; Sylvain Arreckx; Alberto Noronha; Marvin van Aalst; Venkata P. Satagopam; Oliver Ebenhöh; Reinhard Schneider 002; Christophe Trefois; Wei Gu (Bioinform., 2022)

Scalable semi-supervised dimensionality reduction with GPU-accelerated EmbedSOM. - Adam Smelko; Sona Molnárová; Miroslav Kratochvíl; Abhishek Koladiya; Jan Musil; Martin Krulis; Jirí Vondrásek (CoRR, 2022)

Maboss for HPC environments: implementations of the continuous time Boolean model simulator for large CPU clusters and GPU accelerators. - Adam Smelko; Miroslav Kratochvíl; Emmanuel Barillot; Vincent Noël (BMC Bioinform., 2024)