A graph-based approach to construct target-focused libraries for virtual screening. - Misagh Naderi; Chris Alvin; Yun Ding; Supratik Mukhopadhyay; Michal Brylinski (J. Cheminformatics, 2016)

Break Down in Order To Build Up: Decomposing Small Molecules for Fragment-Based Drug Design with eMolFrag. - Tairan Liu; Misagh Naderi; Chris Alvin; Supratik Mukhopadhyay; Michal Brylinski (J. Chem. Inf. Model., 2017)

Binding site matching in rational drug design: algorithms and applications. - Misagh Naderi; Jeffrey Mitchell Lemoine; Rajiv Gandhi Govindaraj; Omar Kana; Wei Pan Feinstein; Michal Brylinski (Briefings Bioinform., 2019)