SHRiMP2: Sensitive yet Practical Short Read Mapping. - Matei David; Misko Dzamba; Dan Lister; Lucian Ilie; Michael Brudno (Bioinform., 2011)

Variant detection and the Autism sequencing project. - Orion J. Buske; Misko Dzamba; Justin Foong; Lynette Lau; Marc Fiume; Christian Marshall; Susan Walker; Aparna Prasad; Michael Brudno (BMC Bioinform., 2011)

AtomNet: A Deep Convolutional Neural Network for Bioactivity Prediction in Structure-based Drug Discovery. - Izhar Wallach; Michael Dzamba; Abraham Heifets (CoRR, 2015)

Hamiltonian Neural Networks. - Samuel Greydanus; Misko Dzamba; Jason Yosinski (NeurIPS, 2019)

Open Materials 2024 (OMat24) Inorganic Materials Dataset and Models. - Luis Barroso-Luque; Muhammed Shuaibi; Xiang Fu 005; Brandon M. Wood; Misko Dzamba; Meng Gao; Ammar Rizvi; C. Lawrence Zitnick; Zachary W. Ulissi (CoRR, 2024)

Learning Smooth and Expressive Interatomic Potentials for Physical Property Prediction. - Xiang Fu 005; Brandon M. Wood; Luis Barroso-Luque; Daniel S. Levine 003; Meng Gao; Misko Dzamba; C. Lawrence Zitnick (CoRR, 2025)

UMA: A Family of Universal Models for Atoms. - Brandon M. Wood; Misko Dzamba; Xiang Fu 005; Meng Gao; Muhammed Shuaibi; Luis Barroso-Luque; Kareem Abdelmaqsoud; Vahe Gharakhanyan; John R. Kitchin; Daniel S. Levine 003; Kyle Michel; Anuroop Sriram; et al. (CoRR, 2025)