SAHG, a comprehensive database of predicted structures of all human proteins. - Chie Motono; Junichi Nakata; Ryotaro Koike; Kana Shimizu; Matsuyuki Shirota; Takayuki Amemiya; Kentaro Tomii; Nozomi Nagano; Naofumi Sakaya; Kiyotaka Misoo; Miwa Sato; Akinori Kidera; et al. (Nucleic Acids Res., 2011)

Extended Template-Based Modeling and Evaluation Method Using Consensus of Binding Mode of GPCRs for Virtual Screening. - Miwa Sato; Takatsugu Hirokawa (J. Chem. Inf. Model., 2014)

The Effect of Conformational Flexibility on Binding Free Energy Estimation between Kinases and Their Inhibitors. - Mitsugu Araki; Narutoshi Kamiya; Miwa Sato; Masahiko Nakatsui; Takatsugu Hirokawa; Yasushi Okuno (J. Chem. Inf. Model., 2016)

MDContactCom: a tool to identify differences of protein molecular dynamics from two MD simulation trajectories in terms of interresidue contacts. - Chie Motono; Shunsuke Yanagida; Miwa Sato; Takatsugu Hirokawa (Bioinform., 2021)

BayesianSSA: a Bayesian statistical model based on structural sensitivity analysis for predicting responses to enzyme perturbations in metabolic networks. - Shion Hosoda; Hisashi Iwata; Takuya Miura; Maiko Tanabe; Takashi Okada; Atsushi Mochizuki; Miwa Sato (BMC Bioinform., 2024)