A new weight freezing method for reducing training time in designing artificial neural networks. - Mobarakol Islam; Md. Shahjahan; Kazuyuki Murase (SMC, 2001)

An Efficient Neural Network Training Algorithm with Maximized Gradient Function and Modulated Chaos. - Mobarakol Islam; Arifur Rahaman; Md. Mehedi Hasan; M. Shahjahan (ISCID (1), 2011)

Multi-modal PixelNet for Brain Tumor Segmentation. - Mobarakol Islam; Hongliang Ren 001 (BrainLes@MICCAI, 2017)

Glioma Prognosis: Segmentation of the Tumor and Survival Prediction Using Shape, Geometric and Clinical Information. - Mobarakol Islam; V. Jeya Maria Jose; Hongliang Ren 001 (BrainLes@MICCAI (2), 2018)

ICHNet: Intracerebral Hemorrhage (ICH) Segmentation Using Deep Learning. - Mobarakol Islam; Parita Sanghani; Angela An Qi See; Michael Lucas James; Nicolas Kon Kam King; Hongliang Ren 001 (BrainLes@MICCAI (1), 2018)

Ischemic Stroke Lesion Segmentation Using Adversarial Learning. - Mobarakol Islam; N. Rajiv Vaidyanathan; V. Jeya Maria Jose; Hongliang Ren 001 (BrainLes@MICCAI (1), 2018)

Finger Movement Classification from Myoelectric Signals Using Convolutional Neural Networks. - Venkatesh Bharadwaj Srinivasan; Mobarakol Islam; Wei Zhang 021; Hongliang Ren 001 (ROBIO, 2018)

Brain Tumor Segmentation and Survival Prediction Using 3D Attention UNet. - Mobarakol Islam; V. S. Vibashan; V. Jeya Maria Jose; Navodini Wijethilake; Uppal Utkarsh; Hongliang Ren 001 (BrainLes@MICCAI (1), 2019)

Learning Where to Look While Tracking Instruments in Robot-Assisted Surgery. - Mobarakol Islam; Yueyuan Li; Hongliang Ren 001 (MICCAI (5), 2019)

Real-Time Instrument Segmentation in Robotic Surgery Using Auxiliary Supervised Deep Adversarial Learning. - Mobarakol Islam; Daniel Anojan Atputharuban; Ravikiran Ramesh; Hongliang Ren 001 (IEEE Robotics Autom. Lett., 2019)

AP-MTL: Attention Pruned Multi-task Learning Model for Real-time Instrument Detection and Segmentation in Robot-assisted Surgery. - Mobarakol Islam; Vibashan VS; Hongliang Ren 001 (ICRA, 2020)

Learning and Reasoning with the Graph Structure Representation in Robotic Surgery. - Mobarakol Islam; Seenivasan Lalithkumar; Lim Chwee Ming; Hongliang Ren 001 (MICCAI (3), 2020)

Radiogenomics of Glioblastoma: Identification of Radiomics Associated with Molecular Subtypes. - Navodini Wijethilake; Mobarakol Islam; Dulani Meedeniya; Charith Chitraranjan; Indika Perera; Hongliang Ren 001 (MLCN/RNO-AI@MICCAI, 2020)

Ultrasound needle segmentation and trajectory prediction using excitation network. - Jia Yi Lee; Mobarakol Islam; Jing Ru Woh; T. S. Mohamed Washeem; Lee Ying Clara Ngoh; Weng Kin Wong; Hongliang Ren 001 (Int. J. Comput. Assist. Radiol. Surg., 2020)

Radiogenomics model for overall survival prediction of glioblastoma. - Navodini Wijethilake; Mobarakol Islam; Hongliang Ren 001 (Medical Biol. Eng. Comput., 2020)

Learning Domain Adaptation with Model Calibration for Surgical Report Generation in Robotic Surgery. - Mengya Xu; Mobarakol Islam; Chwee Ming Lim; Hongliang Ren 001 (ICRA, 2021)

Spatially Varying Label Smoothing: Capturing Uncertainty from Expert Annotations. - Mobarakol Islam; Ben Glocker (IPMI, 2021)

Class-Incremental Domain Adaptation with Smoothing and Calibration for Surgical Report Generation. - Mengya Xu; Mobarakol Islam; Chwee Ming Lim; Hongliang Ren 001 (MICCAI (4), 2021)

Glioma Survival Analysis Empowered With Data Engineering - A Survey. - Navodini Wijethilake; Dulani Meedeniya; Charith Chitraranjan; Indika Perera; Mobarakol Islam; Hongliang Ren 001 (IEEE Access, 2021)

Glioblastoma multiforme prognosis: MRI missing modality generation, segmentation and radiogenomic survival prediction. - Mobarakol Islam; Navodini Wijethilake; Hongliang Ren 001 (Comput. Medical Imaging Graph., 2021)

Class-Distribution-Aware Calibration for Long-Tailed Visual Recognition. - Mobarakol Islam; Seenivasan Lalithkumar; Hongliang Ren 001; Ben Glocker (CoRR, 2021)

2020 CATARACTS Semantic Segmentation Challenge. - Imanol Luengo; Maria Grammatikopoulou; Rahim Mohammadi; Chris Walsh; Chinedu Innocent Nwoye; Deepak Alapatt; Nicolas Padoy; Zhen-Liang Ni; Chen-Chen Fan; Gui-Bin Bian; Zeng-Guang Hou; Heonjin Ha; et al. (CoRR, 2021)

ST-MTL: Spatio-Temporal multitask learning model to predict scanpath while tracking instruments in robotic surgery. - Mobarakol Islam; Vibashan VS; Chwee Ming Lim; Hongliang Ren 001 (Medical Image Anal., 2021)

Frequency Dropout: Feature-Level Regularization via Randomized Filtering. - Mobarakol Islam; Ben Glocker (ECCV Workshops (3), 2022)

Estimating Model Performance Under Domain Shifts with Class-Specific Confidence Scores. - Zeju Li; Konstantinos Kamnitsas; Mobarakol Islam; Chen Chen 042; Ben Glocker (MICCAI (8), 2022)

Surgical-VQA: Visual Question Answering in Surgical Scenes Using Transformer. - Lalithkumar Seenivasan; Mobarakol Islam; Adithya K. Krishna; Hongliang Ren 001 (MICCAI (8), 2022)

Rethinking Surgical Instrument Segmentation: A Background Image Can Be All You Need. - An Wang 007; Mobarakol Islam; Mengya Xu; Hongliang Ren 001 (MICCAI (8), 2022)

Rethinking Surgical Captioning: End-to-End Window-Based MLP Transformer Using Patches. - Mengya Xu; Mobarakol Islam; Hongliang Ren 001 (MICCAI (8), 2022)

Angular Gap: Reducing the Uncertainty of Image Difficulty through Model Calibration. - Bohua Peng; Mobarakol Islam; Mei Tu (ACM Multimedia, 2022)

Class Balanced PixelNet for Neurological Image Segmentation. - Mobarakol Islam; Hongliang Ren 001 (CoRR, 2022)

Bi-Link: Bridging Inductive Link Predictions from Text via Contrastive Learning of Transformers and Prompts. - Bohua Peng; Shihao Liang; Mobarakol Islam (CoRR, 2022)

Identifying risk factors of intracerebral hemorrhage stability using explainable attention model. - Seshasayi Rangaraj; Mobarakol Islam; Vibashan VS; Navodini Wijethilake; Utkarsh Uppal; Angela An Qi See; Jasmine Chan; Michael Lucas James; Nicolas Kon Kam King; Hongliang Ren 001 (Medical Biol. Eng. Comput., 2022)

Global-Reasoned Multi-Task Learning Model for Surgical Scene Understanding. - Seenivasan Lalithkumar; Sai Mitheran; Mobarakol Islam; Hongliang Ren 001 (IEEE Robotics Autom. Lett., 2022)

Rethinking Feature Extraction: Gradient-Based Localized Feature Extraction for End-To-End Surgical Downstream Tasks. - Winnie Pang; Mobarakol Islam; Sai Mitheran; Lalithkumar Seenivasan; Mengya Xu; Hongliang Ren 001 (IEEE Robotics Autom. Lett., 2022)

OneToMany_ToolSynSeg. - An Wang 007; Mobarakol Islam; Mengya Xu; Hongliang Ren 001 (IEEE DataPort, 2022)

Surgical-VQLA:Transformer with Gated Vision-Language Embedding for Visual Question Localized-Answering in Robotic Surgery. - Long Bai 008; Mobarakol Islam; Lalithkumar Seenivasan; Hongliang Ren 001 (ICRA, 2023)

Generalizing Surgical Instruments Segmentation to Unseen Domains with One-to-Many Synthesis. - An Wang 007; Mobarakol Islam; Mengya Xu; Hongliang Ren 001 (IROS, 2023)

LLCaps: Learning to Illuminate Low-Light Capsule Endoscopy with Curved Wavelet Attention and Reverse Diffusion. - Long Bai 008; Tong Chen; Yanan Wu; An Wang 007; Mobarakol Islam; Hongliang Ren 001 (MICCAI (10), 2023)

Revisiting Distillation for Continual Learning on Visual Question Localized-Answering in Robotic Surgery. - Long Bai 008; Mobarakol Islam; Hongliang Ren 001 (MICCAI (9), 2023)

CAT-ViL: Co-attention Gated Vision-Language Embedding for Visual Question Localized-Answering in Robotic Surgery. - Long Bai 008; Mobarakol Islam; Hongliang Ren 001 (MICCAI (9), 2023)

Robustness Stress Testing in Medical Image Classification. - Mobarakol Islam; Zeju Li; Ben Glocker (UNSURE@MICCAI, 2023)

SurgicalGPT: End-to-End Language-Vision GPT for Visual Question Answering in Surgery. - Lalithkumar Seenivasan; Mobarakol Islam; Gokul Kannan; Hongliang Ren 001 (MICCAI (9), 2023)

SAM Meets Robotic Surgery: An Empirical Study on Generalization, Robustness and Adaptation. - An Wang 007; Mobarakol Islam; Mengya Xu; Yang Zhang 053; Hongliang Ren 001 (ISIC/Care-AI/MedAGI/DeCaF@MICCAI, 2023)

S2ME: Spatial-Spectral Mutual Teaching and Ensemble Learning for Scribble-Supervised Polyp Segmentation. - An Wang 007; Mengya Xu; Yang Zhang 053; Mobarakol Islam; Hongliang Ren 001 (MICCAI (1), 2023)

SAM Meets Robotic Surgery: An Empirical Study in Robustness Perspective. - An Wang 007; Mobarakol Islam; Mengya Xu; Yang Zhang 053; Hongliang Ren 001 (CoRR, 2023)

Surgical tool classification and localization: results and methods from the MICCAI 2022 SurgToolLoc challenge. - Aneeq Zia; Kiran Bhattacharyya; Xi Liu; Max Berniker; Ziheng Wang 003; Rogerio Nespolo; Satoshi Kondo; Satoshi Kasai; Kousuke Hirasawa; Bo Liu; David Austin; Yiheng Wang; et al. (CoRR, 2023)

Surgical-VQLA: Transformer with Gated Vision-Language Embedding for Visual Question Localized-Answering in Robotic Surgery. - Long Bai 008; Mobarakol Islam; Lalithkumar Seenivasan; Hongliang Ren 001 (CoRR, 2023)

SimCol3D - 3D Reconstruction during Colonoscopy Challenge. - Anita Rau; Sophia Bano; Yueming Jin; Pablo Azagra; Javier Morlana; Edward Sanderson; Bogdan J. Matuszewski; Jae Young Lee; Dong-Jae Lee; Erez Posner; Netanel Frank; Varshini Elangovan; et al. (CoRR, 2023)

Landmark Detection using Transformer Toward Robot-assisted Nasal Airway Intubation. - Tianhang Liu; Hechen Li; Long Bai 008; Yanan Wu; An Wang 007; Mobarakol Islam; Hongliang Ren 001 (CoRR, 2023)

Task-aware asynchronous multi-task model with class incremental contrastive learning for surgical scene understanding. - Lalithkumar Seenivasan; Mobarakol Islam; Mengya Xu; Chwee Ming Lim; Hongliang Ren 001 (Int. J. Comput. Assist. Radiol. Surg., 2023)

CholecTriplet2021: A benchmark challenge for surgical action triplet recognition. - Chinedu Innocent Nwoye; Deepak Alapatt; Tong Yu 009; Armine Vardazaryan; Fangfang Xia; Zixuan Zhao; Tong Xia; Fucang Jia; Yuxuan Yang; Hao Wang 081; Derong Yu; Guoyan Zheng; et al. (Medical Image Anal., 2023)

Paced-curriculum distillation with prediction and label uncertainty for image segmentation. - Mobarakol Islam; Lalithkumar Seenivasan; S. P. Sharan; V. K. Viekash; Bhavesh Gupta; Ben Glocker; Hongliang Ren 001 (Int. J. Comput. Assist. Radiol. Surg., 2023)

DARES: Depth Anything in Robotic Endoscopic Surgery with Self-supervised Vector-LoRA of the Foundation Model. - Mona Sheikh Zeinoddin; Chiara Lena; Jiongqi Qu; Luca Carlini; Mattia Magro; Seunghoi Kim; Elena De Momi; Sophia Bano; Matthew Grech-Sollars; Evangelos B. Mazomenos; Daniel C. Alexander; Danail Stoyanov; et al. (ECCV Workshops (11), 2024)

LLM-Assisted Multi-Teacher Continual Learning for Visual Question Answering in Robotic Surgery. - Kexin Chen 003; Yuyang Du 001; Tao You; Mobarakol Islam; Ziyu Guo; Yueming Jin; Guangyong Chen; Pheng-Ann Heng (ICRA, 2024)

OSSAR: Towards Open-Set Surgical Activity Recognition in Robot-assisted Surgery. - Long Bai 008; Guankun Wang; Jie Wang 097; Xiaoxiao Yang; Huxin Gao; Xin Liang; An Wang 007; Mobarakol Islam; Hongliang Ren 001 (ICRA, 2024)

Endoood: Uncertainty-Aware Out-of-Distribution Detection in Capsule Endoscopy Diagnosis. - Qiaozhi Tan; Long Bai 008; Guankun Wang; Mobarakol Islam; Hongliang Ren 001 (ISBI, 2024)

EndoUIC: Promptable Diffusion Transformer for Unified Illumination Correction in Capsule Endoscopy. - Long Bai 008; Tong Chen; Qiaozhi Tan; Wan Jun Nah; Yanheng Li; Zhicheng He 010; Sishen Yuan; Zhen Chen 018; Jinlin Wu; Mobarakol Islam; Zhen Li 026; Hongbin Liu 001; et al. (MICCAI (7), 2024)

EndoDAC: Efficient Adapting Foundation Model for Self-Supervised Depth Estimation from Any Endoscopic Camera. - Beilei Cui; Mobarakol Islam; Long Bai 008; An Wang 007; Hongliang Ren 001 (MICCAI (6), 2024)

PitVQA: Image-Grounded Text Embedding LLM for Visual Question Answering in Pituitary Surgery. - Runlong He; Mengya Xu; Adrito Das; Danyal Z. Khan; Sophia Bano; Hani J. Marcus; Danail Stoyanov; Matthew J. Clarkson; Mobarakol Islam (MICCAI (6), 2024)

Endo-4DGS: Endoscopic Monocular Scene Reconstruction with 4D Gaussian Splatting. - Yiming Huang; Beilei Cui; Long Bai 008; Ziqi Guo; Mengya Xu; Mobarakol Islam; Hongliang Ren 001 (MICCAI (6), 2024)

Illumination Histogram Consistency Metric for Quantitative Assessment of Video Sequences. - Long Chen 019; Mobarakol Islam; Matthew J. Clarkson; Thomas Dowrick (CoRR, 2024)

Surgical-LVLM: Learning to Adapt Large Vision-Language Model for Grounded Visual Question Answering in Robotic Surgery. - Guankun Wang; Long Bai 008; Wan Jun Nah; Jie Wang 097; Zhaoxi Zhang; Zhen Chen 018; Jinlin Wu; Mobarakol Islam; Hongbin Liu 001; Hongliang Ren 001 (CoRR, 2024)

SAM 2 in Robotic Surgery: An Empirical Evaluation for Robustness and Generalization in Surgical Video Segmentation. - Jieming Yu; An Wang 007; Wenzhen Dong; Mengya Xu; Mobarakol Islam; Jie Wang 097; Long Bai 008; Hongliang Ren 001 (CoRR, 2024)

SurgicalGS: Dynamic 3D Gaussian Splatting for Accurate Robotic-Assisted Surgical Scene Reconstruction. - Jialei Chen 007; Xin Zhang; Mobarakol Islam; Francisco Vasconcelos 001; Danail Stoyanov; Daniel S. Elson; Baoru Huang (CoRR, 2024)

Transferring Knowledge from High-Quality to Low-Quality MRI for Adult Glioma Diagnosis. - Yanguang Zhao; Long Bai 008; Zhaoxi Zhang; Yanan Wu; Mobarakol Islam; Hongliang Ren 001 (CoRR, 2024)

SimCol3D - 3D reconstruction during colonoscopy challenge. - Anita Rau; Sophia Bano; Yueming Jin; Pablo Azagra; Javier Morlana; Rawen Kader; Edward Sanderson; Bogdan J. Matuszewski; Jae Young Lee; Dong-Jae Lee; Erez Posner; Netanel Frank; et al. (Medical Image Anal., 2024)

Surgical-DINO: adapter learning of foundation models for depth estimation in endoscopic surgery. - Beilei Cui; Mobarakol Islam; Long Bai 008; Hongliang Ren 001 (Int. J. Comput. Assist. Radiol. Surg., 2024)

PitSurgRT: real-time localization of critical anatomical structures in endoscopic pituitary surgery. - Zhehua Mao; Adrito Das; Mobarakol Islam; Danyal Z. Khan; Simon C. Williams; John G. Hanrahan; Anouk Borg; Neil L. Dorward; Matthew J. Clarkson; Danail Stoyanov; Hani J. Marcus; Sophia Bano (Int. J. Comput. Assist. Radiol. Surg., 2024)

Privacy-Preserving Synthetic Continual Semantic Segmentation for Robotic Surgery. - Mengya Xu; Mobarakol Islam; Long Bai 008; Hongliang Ren 001 (IEEE Trans. Medical Imaging, 2024)

Surgical-DeSAM: decoupling SAM for instrument segmentation in robotic surgery. - Yuyang Sheng; Sophia Bano; Matthew J. Clarkson; Mobarakol Islam (Int. J. Comput. Assist. Radiol. Surg., 2024)

Curriculum-Based Augmented Fourier Domain Adaptation for Robust Medical Image Segmentation. - An Wang 007; Mobarakol Islam; Mengya Xu; Hongliang Ren 001 (IEEE Trans Autom. Sci. Eng., 2024)

Confidence-Aware Paced-Curriculum Learning by Label Smoothing for Surgical Scene Understanding. - Mengya Xu; Mobarakol Islam; Ben Glocker; Hongliang Ren 001 (IEEE Trans Autom. Sci. Eng., 2024)

PedSemiSeg: Pedagogy-inspired semi-supervised polyp segmentation. - An Wang 007; Haoyu Ma; Long Bai 008; Yanan Wu; Mengya Xu; Yang Zhang 053; Mobarakol Islam; Hongliang Ren 001 (Comput. Medical Imaging Graph., 2025)

Multimodal graph representation learning for robust surgical workflow recognition with adversarial feature disentanglement. - Long Bai 008; Boyi Ma; Ruohan Wang; Guankun Wang; Beilei Cui; Zhongliang Jiang; Mobarakol Islam; Zhe Min; Jiewen Lai; Nassir Navab; Hongliang Ren 001 (Inf. Fusion, 2025)

Surgical-VQLA++: Adversarial contrastive learning for calibrated robust visual question-localized answering in robotic surgery. - Long Bai 008; Guankun Wang; Mobarakol Islam; Lalithkumar Seenivasan; An Wang 007; Hongliang Ren 001 (Inf. Fusion, 2025)

Rethinking data imbalance in class incremental surgical instrument segmentation. - Shifang Zhao; Long Bai 008; Kun Yuan 004; Feng Li 034; Jieming Yu; Wenzhen Dong; Guankun Wang; Mobarakol Islam; Nicolas Padoy; Nassir Navab; Hongliang Ren 001 (Medical Image Anal., 2025)

PitVQA++: Vector Matrix-Low-Rank Adaptation for Open-Ended Visual Question Answering in Pituitary Surgery. - Runlong He; Danyal Z. Khan; Evangelos B. Mazomenos; Hani J. Marcus; Danail Stoyanov; Matthew J. Clarkson; Mobarakol Islam (CoRR, 2025)

Endo-FASt3r: Endoscopic Foundation model Adaptation for Structure from motion. - Mona Sheikh Zeinoddin; Mobarakol Islam; Zafer Tandogdu; Greg Shaw; Matthew J. Clarkson; Evangelos B. Mazomenos; Danail Stoyanov (CoRR, 2025)

SurgicalVLM-Agent: Towards an Interactive AI Co-Pilot for Pituitary Surgery. - Jiayuan Huang; Runlong He; Danyal Z. Khan; Evangelos B. Mazomenos; Danail Stoyanov; Hani J. Marcus; Matthew J. Clarkson; Mobarakol Islam (CoRR, 2025)

Learning to Efficiently Adapt Foundation Models for Self-Supervised Endoscopic 3D Scene Reconstruction from Any Cameras. - Beilei Cui; Long Bai 008; Mobarakol Islam; An Wang 007; Zhiqi Ma; Yiming Huang; Feng Li 034; Zhen Chen 018; Zhongliang Jiang; Nassir Navab; Hongliang Ren 001 (CoRR, 2025)

Augmented reality system for endoscopic pituitary surgery with automatic registration. - Aure Enkaoua; João Ramalhinho; Mobarakol Islam; Hani J. Marcus; Matthew J. Clarkson (Int. J. Comput. Assist. Radiol. Surg., 2025)