Ankh: Optimized Protein Language Model Unlocks General-Purpose Modelling. - Ahmed Elnaggar; Hazem Essam; Wafaa Salah-Eldin; Walid Moustafa; Mohamed Elkerdawy; Charlotte Rochereau; Burkhard Rost (CoRR, 2023)

Beyond Simple Concatenation: Fairly Assessing PLM Architectures for Multi-Chain Protein-Protein Interactions Prediction. - Hazem Alsamkary; Mohamed Elshaffei; Mohamed Soudy; Sara Ossman; Abdallah Amr; Nehal Adel Abdelsalam; Mohamed Elkerdawy; Ahmed Elnaggar (CoRR, 2025)

Ankh3: Multi-Task Pretraining with Sequence Denoising and Completion Enhances Protein Representations. - Hazem Alsamkary; Mohamed Elshaffei; Mohamed Elkerdawy; Ahmed Elnaggar (CoRR, 2025)