Beyond Simple Concatenation: Fairly Assessing PLM Architectures for Multi-Chain Protein-Protein Interactions Prediction. - Hazem Alsamkary; Mohamed Elshaffei; Mohamed Soudy; Sara Ossman; Abdallah Amr; Nehal Adel Abdelsalam; Mohamed Elkerdawy; Ahmed Elnaggar (CoRR, 2025)

Ankh3: Multi-Task Pretraining with Sequence Denoising and Completion Enhances Protein Representations. - Hazem Alsamkary; Mohamed Elshaffei; Mohamed Elkerdawy; Ahmed Elnaggar (CoRR, 2025)