Multiple virtual screening approaches for finding new Hepatitis c virus RNA-dependent RNA polymerase inhibitors: Structure-based screens and molecular dynamics for the pursue of new poly pharmacological inhibitors. - Mahmoud ElHefnawi; Mohammad ElGamacy; Mohamed Fares (BMC Bioinform., 2012)

MetaFlow: an interactive user-friendly workflow for automated analysis of whole genome shotgun sequencing metagenomic data. - Usama Bakry; Mohamed Fares; Ali Kishk; Mohamed El-Hadidi (BIBM, 2018)

Insilico Codon Bias Correction for Transgenic Biological Protein Sequences for Vaccine Production. - Mohamed Abuelanin; Mohamed Fares; Mohamed El-Hadidi (NILES, 2020)

Predictive models of RNA degradation through dual crowdsourcing. - Hannah K. Wayment-Steele; Wipapat Kladwang; Andrew M. Watkins; Do Soon Kim; Bojan Tunguz; Walter Reade; Maggie Demkin; Jonathan Romano; Roger Wellington-Oguri; John J. Nicol; Jiayang Gao; Kazuki Onodera; et al. (CoRR, 2021)

Deep learning models for predicting RNA degradation via dual crowdsourcing. - Hannah K. Wayment-Steele; Wipapat Kladwang; Andrew M. Watkins; Do Soon Kim; Bojan Tunguz; Walter Reade; Maggie Demkin; Jonathan Romano; Roger Wellington-Oguri; John J. Nicol; Jiayang Gao; Kazuki Onodera; et al. (Nat. Mac. Intell., 2022)