Next-Generation Sequence Assembly: Four Stages of Data Processing and Computational Challenges. - Sara El-Metwally; Taher Hamza; Magdi Zakaria; Mohamed Helmy (PLoS Comput. Biol., 2013)

FN-Identify: Novel Restriction Enzymes-Based Method for Bacterial Identification in Absence of Genome Sequencing. - Mohamed Awad; Osama Ouda; Ali El-Refy; Fawzy A. El-Feky; Kareem A. Mosa; Mohamed Helmy (Adv. Bioinformatics, 2015)

Ten Simple Rules for Developing Public Biological Databases. - Mohamed Helmy; Alexander Crits-Christoph; Gary D. Bader (PLoS Comput. Biol., 2016)

Identification of effective DNA barcodes for Triticum plants through chloroplast genome-wide analysis. - Mohamed Awad; Ragab M. Fahmy; Kareem A. Mosa; Mohamed Helmy; Fawzy A. El-Feky (Comput. Biol. Chem., 2017)

A reference map of the human binary protein interactome. - Katja Luck; Dae-Kyum Kim; Luke Lambourne; Kerstin Spirohn; Bridget E. Begg; Wenting Bian; Ruth Brignall; Tiziana Cafarelli; Francisco J. Campos-Laborie; Benoît Charloteaux; Dong-Sic Choi; Atina G. Coté; et al. (Nat., 2020)

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. - Esther Rheinbay; Morten Muhlig Nielsen; Federico Abascal; Jeremiah Wala; Ofer Shapira; Grace Tiao; Henrik Hornshøj; Julian M. Hess; Randi Istrup Juul; Ziao Lin; Lars Feuerbach; Radhakrishnan Sabarinathan; et al. (Nat., 2020)

GeneCloudOmics: A Data Analytic Cloud Platform for High-Throughput Gene Expression Analysis. - Mohamed Helmy; Rahul Agrawal; Javed Ali; Mohamed Soudy; Thuy Tien Bui; Kumar Selvarajoo (Frontiers Bioinform., 2021)