Optimal Exact Strring Matching Based on Suffix Arrays. - Mohamed Ibrahim Abouelhoda; Enno Ohlebusch; Stefan Kurtz (SPIRE, 2002)

The Enhanced Suffix Array and Its Applications to Genome Analysis. - Mohamed Ibrahim Abouelhoda; Stefan Kurtz; Enno Ohlebusch (WABI, 2002)

Multiple Genome Alignment: Chaining Algorithms Revisited. - Mohamed Ibrahim Abouelhoda; Enno Ohlebusch (CPM, 2003)

A Local Chaining Algorithm and Its Applications in Comparative Genomics. - Mohamed Ibrahim Abouelhoda; Enno Ohlebusch (WABI, 2003)

Replacing suffix trees with enhanced suffix arrays. - Mohamed Ibrahim Abouelhoda; Stefan Kurtz; Enno Ohlebusch (J. Discrete Algorithms, 2004)

Algorithms and a software system for comparative genome analysis. - Mohamed Ibrahim Abouelhoda (2005)

The Median Problem for the Reversal Distance in Circular Bacterial Genomes. - Enno Ohlebusch; Mohamed Ibrahim Abouelhoda; Kathrin Hockel; Jan Stallkamp (CPM, 2005)

Efficient mapping of large cDNA/EST databases to genomes: A comparison of two different strategies. - Christian Wawra; Mohamed Ibrahim Abouelhoda; Enno Ohlebusch (German Conference on Bioinformatics, 2005)

Algorithmen und Softwarewerkzeuge für Vergleichende Genomanalyse. - Mohamed Ibrahim Abouelhoda (Ausgezeichnete Informatikdissertationen, 2005)

Chaining algorithms for multiple genome comparison. - Mohamed Ibrahim Abouelhoda; Enno Ohlebusch (J. Discrete Algorithms, 2005)

A Chaining Algorithm for Mapping cDNA Sequences to Multiple Genomic Sequences. - Mohamed Ibrahim Abouelhoda (SPIRE, 2007)

A linear time algorithm for the inversion median problem in circular bacterial genomes. - Enno Ohlebusch; Mohamed Ibrahim Abouelhoda; Kathrin Hockel (J. Discrete Algorithms, 2007)

Alignment of Minisatellite Maps: A Minimum Spanning Tree-based Approach. - Mohamed Ibrahim Abouelhoda; Robert Giegerich; Behshad Behzadi; Jean-Marc Steyaert (APBC, 2008)

CoCoNUT: an efficient system for the comparison and analysis of genomes. - Mohamed Ibrahim Abouelhoda; Stefan Kurtz; Enno Ohlebusch (BMC Bioinform., 2008)

A fast algorithm for the multiple genome rearrangement problem with weighted reversals and transpositions. - Martin Bader; Mohamed Ibrahim Abouelhoda; Enno Ohlebusch (BMC Bioinform., 2008)

WinBioinfTools: Bioinformatics tools for Windows cluster. - Hisham Mohamed 001; Mohamed Ibrahim Abouelhoda (CLUSTER, 2009)

WinBioinfTools: Bioinformatics Tools for Windows High Performance Computing Server 2008 - Mohamed Ibrahim Abouelhoda; Hisham Mohamed 001 (CoRR, 2009)

Alignment of Minisatellite Maps Based on Run-Length Encoding Scheme. - Mohamed Ibrahim Abouelhoda; Robert Giegerich; Behshad Behzadi; Jean-Marc Steyaert (J. Bioinform. Comput. Biol., 2009)

Parallel Chaining Algorithms. - Mohamed Ibrahim Abouelhoda; Hisham Mohamed 001 (EuroMPI, 2010)

Computing the Burrows-Wheeler Transform of a String and Its Reverse. - Enno Ohlebusch; Timo Beller; Mohamed Ibrahim Abouelhoda (CPM, 2012)

Computing the Burrows-Wheeler transform of a string and its reverse in parallel. - Enno Ohlebusch; Timo Beller; Mohamed Ibrahim Abouelhoda (J. Discrete Algorithms, 2014)